miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 5' -55.2 NC_005261.1 + 136733 0.69 0.814525
Target:  5'- aCUGCAAGUCCcGCuGC-UGCaagCCGUCGg -3'
miRNA:   3'- -GAUGUUCAGGaCGcUGcACG---GGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 135518 0.66 0.928253
Target:  5'- -gACGAGUgCCUGaCGugGUGCaaguuCGUUGc -3'
miRNA:   3'- gaUGUUCA-GGAC-GCugCACGg----GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 135039 0.73 0.608184
Target:  5'- -gGCGAGgccgacgCCUGCGGCGgcagcgGCCCGcCGc -3'
miRNA:   3'- gaUGUUCa------GGACGCUGCa-----CGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 132676 0.67 0.898195
Target:  5'- gUGCGAGgacaagaugggcuUCCgcGUGGcCGUGCCCGUCc -3'
miRNA:   3'- gAUGUUC-------------AGGa-CGCU-GCACGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 132479 0.66 0.928253
Target:  5'- -gGCAGcgccucgccGUCCUGgGACGcGCCCGaccgCGa -3'
miRNA:   3'- gaUGUU---------CAGGACgCUGCaCGGGCa---GC- -5'
23584 5' -55.2 NC_005261.1 + 127212 0.69 0.778352
Target:  5'- -gACGGGcCCgGCGACGaGgCCGUCGa -3'
miRNA:   3'- gaUGUUCaGGaCGCUGCaCgGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 124854 0.68 0.831643
Target:  5'- -cGCAGGU-CUGCGGCGUcgucGCCuuCGUCGu -3'
miRNA:   3'- gaUGUUCAgGACGCUGCA----CGG--GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 122485 0.67 0.871112
Target:  5'- -gGCGAGgcggucggCCUGCGcGCGgacgGCcCCGUCGc -3'
miRNA:   3'- gaUGUUCa-------GGACGC-UGCa---CG-GGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 120447 0.66 0.928253
Target:  5'- -gGCGugcgCCUGCucuccgcgauaGACGgGCCCGUCGa -3'
miRNA:   3'- gaUGUuca-GGACG-----------CUGCaCGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 118246 0.7 0.749806
Target:  5'- cCUACGccgUCUGCGGCGUGCCgGUg- -3'
miRNA:   3'- -GAUGUucaGGACGCUGCACGGgCAgc -5'
23584 5' -55.2 NC_005261.1 + 111048 1.08 0.0037
Target:  5'- gCUACAAGUCCUGCGACGUGCCCGUCGu -3'
miRNA:   3'- -GAUGUUCAGGACGCUGCACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 109756 0.71 0.700266
Target:  5'- gUACAGGUCgaGCGugGccggcucgGCCCGcCGg -3'
miRNA:   3'- gAUGUUCAGgaCGCugCa-------CGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 108968 0.76 0.441598
Target:  5'- -aGCGGGcCCUccaGCGGCGgcgGCCCGUCGc -3'
miRNA:   3'- gaUGUUCaGGA---CGCUGCa--CGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 108564 0.71 0.679981
Target:  5'- -cGCAcGUCgUGCGACGUGCgCG-CGa -3'
miRNA:   3'- gaUGUuCAGgACGCUGCACGgGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 105147 0.69 0.777419
Target:  5'- -cGCAGGUCCUcgcggcucgaggGCGGCGUccacgggGCCCGcCGc -3'
miRNA:   3'- gaUGUUCAGGA------------CGCUGCA-------CGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 98805 0.67 0.892252
Target:  5'- -aACGGGUCgCcgGCGGCGUGCCgGa-- -3'
miRNA:   3'- gaUGUUCAG-Ga-CGCUGCACGGgCagc -5'
23584 5' -55.2 NC_005261.1 + 98747 0.71 0.72032
Target:  5'- -gGCGAucaucGUCC-GCGGCGgGCCCGUUGg -3'
miRNA:   3'- gaUGUU-----CAGGaCGCUGCaCGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 96195 0.68 0.84803
Target:  5'- -gGCGcAGUaCC-GCGACGgggccaUGCCCGUCGu -3'
miRNA:   3'- gaUGU-UCA-GGaCGCUGC------ACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 91995 0.68 0.831643
Target:  5'- -cGCGg--CCUGCGACGcGCUCGUCc -3'
miRNA:   3'- gaUGUucaGGACGCUGCaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 91338 0.68 0.863626
Target:  5'- aCUACAAGcUCCUGCuGCGcagcgagGCCCGcCc -3'
miRNA:   3'- -GAUGUUC-AGGACGcUGCa------CGGGCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.