miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 5' -55.2 NC_005261.1 + 111048 1.08 0.0037
Target:  5'- gCUACAAGUCCUGCGACGUGCCCGUCGu -3'
miRNA:   3'- -GAUGUUCAGGACGCUGCACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 73770 0.79 0.303964
Target:  5'- uCUACGAGgcgcuggCCUGCGACGUGCgCG-CGg -3'
miRNA:   3'- -GAUGUUCa------GGACGCUGCACGgGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 63697 0.77 0.380698
Target:  5'- aUACAGGUUCUGCGGCGUguuGCCCagGUCc -3'
miRNA:   3'- gAUGUUCAGGACGCUGCA---CGGG--CAGc -5'
23584 5' -55.2 NC_005261.1 + 4451 0.76 0.441598
Target:  5'- -aGCGGGcCCUccaGCGGCGgcgGCCCGUCGc -3'
miRNA:   3'- gaUGUUCaGGA---CGCUGCa--CGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 108968 0.76 0.441598
Target:  5'- -aGCGGGcCCUccaGCGGCGgcgGCCCGUCGc -3'
miRNA:   3'- gaUGUUCaGGA---CGCUGCa--CGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 5238 0.74 0.527292
Target:  5'- gUACAGGUCgaGCGuggccggcuCGUGCCCGcCGg -3'
miRNA:   3'- gAUGUUCAGgaCGCu--------GCACGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 135039 0.73 0.608184
Target:  5'- -gGCGAGgccgacgCCUGCGGCGgcagcgGCCCGcCGc -3'
miRNA:   3'- gaUGUUCa------GGACGCUGCa-----CGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 108564 0.71 0.679981
Target:  5'- -cGCAcGUCgUGCGACGUGCgCG-CGa -3'
miRNA:   3'- gaUGUuCAGgACGCUGCACGgGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 109756 0.71 0.700266
Target:  5'- gUACAGGUCgaGCGugGccggcucgGCCCGcCGg -3'
miRNA:   3'- gAUGUUCAGgaCGCugCa-------CGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 98747 0.71 0.72032
Target:  5'- -gGCGAucaucGUCC-GCGGCGgGCCCGUUGg -3'
miRNA:   3'- gaUGUU-----CAGGaCGCUGCaCGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 88047 0.71 0.72032
Target:  5'- gCUGCAccGGcUgCUGCGGCgGUGCCCG-CGg -3'
miRNA:   3'- -GAUGU--UC-AgGACGCUG-CACGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 89196 0.7 0.740069
Target:  5'- -gGCGGcugCCUGCG-CGUGCCCGcCGc -3'
miRNA:   3'- gaUGUUca-GGACGCuGCACGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 118246 0.7 0.749806
Target:  5'- cCUACGccgUCUGCGGCGUGCCgGUg- -3'
miRNA:   3'- -GAUGUucaGGACGCUGCACGGgCAgc -5'
23584 5' -55.2 NC_005261.1 + 80726 0.7 0.768956
Target:  5'- -aAgAAGgcccgCCgccGgGACGUGCCCGUCGc -3'
miRNA:   3'- gaUgUUCa----GGa--CgCUGCACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 18594 0.7 0.768956
Target:  5'- -gGCGcAGcCgUGCGAgGUGUCCGUCGc -3'
miRNA:   3'- gaUGU-UCaGgACGCUgCACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 17253 0.7 0.768956
Target:  5'- aCUACGGGgCCUGCGGCGgcacgcGcCCCG-CGg -3'
miRNA:   3'- -GAUGUUCaGGACGCUGCa-----C-GGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 83376 0.69 0.775547
Target:  5'- gUGCGGGUucagCCUGCGGCGccggcagcuagcccUGCCCG-CGu -3'
miRNA:   3'- gAUGUUCA----GGACGCUGC--------------ACGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 105147 0.69 0.777419
Target:  5'- -cGCAGGUCCUcgcggcucgaggGCGGCGUccacgggGCCCGcCGc -3'
miRNA:   3'- gaUGUUCAGGA------------CGCUGCA-------CGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 22695 0.69 0.778352
Target:  5'- -gACGGGcCCgGCGACGaGgCCGUCGa -3'
miRNA:   3'- gaUGUUCaGGaCGCUGCaCgGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 127212 0.69 0.778352
Target:  5'- -gACGGGcCCgGCGACGaGgCCGUCGa -3'
miRNA:   3'- gaUGUUCaGGaCGCUGCaCgGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.