miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 5' -55.2 NC_005261.1 + 68425 0.68 0.831643
Target:  5'- -gGCGcGUCCUGCaccuguucGACGUGCCCa--- -3'
miRNA:   3'- gaUGUuCAGGACG--------CUGCACGGGcagc -5'
23584 5' -55.2 NC_005261.1 + 73770 0.79 0.303964
Target:  5'- uCUACGAGgcgcuggCCUGCGACGUGCgCG-CGg -3'
miRNA:   3'- -GAUGUUCa------GGACGCUGCACGgGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 74636 0.68 0.863626
Target:  5'- gCUGCGc-UUCUGgGACGaGCCCGUCu -3'
miRNA:   3'- -GAUGUucAGGACgCUGCaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 74719 0.69 0.823171
Target:  5'- uUGCGAGUUCaucGCGAC--GCCCGUCu -3'
miRNA:   3'- gAUGUUCAGGa--CGCUGcaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 80726 0.7 0.768956
Target:  5'- -aAgAAGgcccgCCgccGgGACGUGCCCGUCGc -3'
miRNA:   3'- gaUgUUCa----GGa--CgCUGCACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 83376 0.69 0.775547
Target:  5'- gUGCGGGUucagCCUGCGGCGccggcagcuagcccUGCCCG-CGu -3'
miRNA:   3'- gAUGUUCA----GGACGCUGC--------------ACGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 86248 0.68 0.847229
Target:  5'- aUGCAGcGUCgUGUGcgcgcacGCGUGCCgGUCGu -3'
miRNA:   3'- gAUGUU-CAGgACGC-------UGCACGGgCAGC- -5'
23584 5' -55.2 NC_005261.1 + 88047 0.71 0.72032
Target:  5'- gCUGCAccGGcUgCUGCGGCgGUGCCCG-CGg -3'
miRNA:   3'- -GAUGU--UC-AgGACGCUG-CACGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 89151 0.68 0.831643
Target:  5'- -aGCGGGcCCgcgGCG-CGUGCCCGcuUCGc -3'
miRNA:   3'- gaUGUUCaGGa--CGCuGCACGGGC--AGC- -5'
23584 5' -55.2 NC_005261.1 + 89196 0.7 0.740069
Target:  5'- -gGCGGcugCCUGCG-CGUGCCCGcCGc -3'
miRNA:   3'- gaUGUUca-GGACGCuGCACGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 89260 0.66 0.928253
Target:  5'- aCUACGccUCggGCGAgGUGCCCGUg- -3'
miRNA:   3'- -GAUGUucAGgaCGCUgCACGGGCAgc -5'
23584 5' -55.2 NC_005261.1 + 90859 0.66 0.928253
Target:  5'- -gAC-GGUUgUGCGcGCGcuggUGCCCGUCGg -3'
miRNA:   3'- gaUGuUCAGgACGC-UGC----ACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 91338 0.68 0.863626
Target:  5'- aCUACAAGcUCCUGCuGCGcagcgagGCCCGcCc -3'
miRNA:   3'- -GAUGUUC-AGGACGcUGCa------CGGGCaGc -5'
23584 5' -55.2 NC_005261.1 + 91995 0.68 0.831643
Target:  5'- -cGCGg--CCUGCGACGcGCUCGUCc -3'
miRNA:   3'- gaUGUucaGGACGCUGCaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 96195 0.68 0.84803
Target:  5'- -gGCGcAGUaCC-GCGACGgggccaUGCCCGUCGu -3'
miRNA:   3'- gaUGU-UCA-GGaCGCUGC------ACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 98747 0.71 0.72032
Target:  5'- -gGCGAucaucGUCC-GCGGCGgGCCCGUUGg -3'
miRNA:   3'- gaUGUU-----CAGGaCGCUGCaCGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 98805 0.67 0.892252
Target:  5'- -aACGGGUCgCcgGCGGCGUGCCgGa-- -3'
miRNA:   3'- gaUGUUCAG-Ga-CGCUGCACGGgCagc -5'
23584 5' -55.2 NC_005261.1 + 105147 0.69 0.777419
Target:  5'- -cGCAGGUCCUcgcggcucgaggGCGGCGUccacgggGCCCGcCGc -3'
miRNA:   3'- gaUGUUCAGGA------------CGCUGCA-------CGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 108564 0.71 0.679981
Target:  5'- -cGCAcGUCgUGCGACGUGCgCG-CGa -3'
miRNA:   3'- gaUGUuCAGgACGCUGCACGgGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 108968 0.76 0.441598
Target:  5'- -aGCGGGcCCUccaGCGGCGgcgGCCCGUCGc -3'
miRNA:   3'- gaUGUUCaGGA---CGCUGCa--CGGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.