miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23584 5' -55.2 NC_005261.1 + 96195 0.68 0.84803
Target:  5'- -gGCGcAGUaCC-GCGACGgggccaUGCCCGUCGu -3'
miRNA:   3'- gaUGU-UCA-GGaCGCUGC------ACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 63049 0.68 0.84803
Target:  5'- ---aAGGUCC-GCGACaugcGCCCGUCGc -3'
miRNA:   3'- gaugUUCAGGaCGCUGca--CGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 86248 0.68 0.847229
Target:  5'- aUGCAGcGUCgUGUGcgcgcacGCGUGCCgGUCGu -3'
miRNA:   3'- gAUGUU-CAGgACGC-------UGCACGGgCAGC- -5'
23584 5' -55.2 NC_005261.1 + 17758 0.68 0.839932
Target:  5'- gUGCAGGUgUaGuCGACGgGCCCGUCu -3'
miRNA:   3'- gAUGUUCAgGaC-GCUGCaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 91995 0.68 0.831643
Target:  5'- -cGCGg--CCUGCGACGcGCUCGUCc -3'
miRNA:   3'- gaUGUucaGGACGCUGCaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 89151 0.68 0.831643
Target:  5'- -aGCGGGcCCgcgGCG-CGUGCCCGcuUCGc -3'
miRNA:   3'- gaUGUUCaGGa--CGCuGCACGGGC--AGC- -5'
23584 5' -55.2 NC_005261.1 + 68425 0.68 0.831643
Target:  5'- -gGCGcGUCCUGCaccuguucGACGUGCCCa--- -3'
miRNA:   3'- gaUGUuCAGGACG--------CUGCACGGGcagc -5'
23584 5' -55.2 NC_005261.1 + 124854 0.68 0.831643
Target:  5'- -cGCAGGU-CUGCGGCGUcgucGCCuuCGUCGu -3'
miRNA:   3'- gaUGUUCAgGACGCUGCA----CGG--GCAGC- -5'
23584 5' -55.2 NC_005261.1 + 21210 0.68 0.831643
Target:  5'- -cGCuGGcCCcggccGCGACGgcggGCCCGUCGg -3'
miRNA:   3'- gaUGuUCaGGa----CGCUGCa---CGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 74719 0.69 0.823171
Target:  5'- uUGCGAGUUCaucGCGAC--GCCCGUCu -3'
miRNA:   3'- gAUGUUCAGGa--CGCUGcaCGGGCAGc -5'
23584 5' -55.2 NC_005261.1 + 136733 0.69 0.814525
Target:  5'- aCUGCAAGUCCcGCuGC-UGCaagCCGUCGg -3'
miRNA:   3'- -GAUGUUCAGGaCGcUGcACG---GGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 29872 0.69 0.796738
Target:  5'- -gGCAGGgaugcgCCUGCGACGgcggcgGCCCuggcgcggGUCGc -3'
miRNA:   3'- gaUGUUCa-----GGACGCUGCa-----CGGG--------CAGC- -5'
23584 5' -55.2 NC_005261.1 + 22695 0.69 0.778352
Target:  5'- -gACGGGcCCgGCGACGaGgCCGUCGa -3'
miRNA:   3'- gaUGUUCaGGaCGCUGCaCgGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 127212 0.69 0.778352
Target:  5'- -gACGGGcCCgGCGACGaGgCCGUCGa -3'
miRNA:   3'- gaUGUUCaGGaCGCUGCaCgGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 105147 0.69 0.777419
Target:  5'- -cGCAGGUCCUcgcggcucgaggGCGGCGUccacgggGCCCGcCGc -3'
miRNA:   3'- gaUGUUCAGGA------------CGCUGCA-------CGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 83376 0.69 0.775547
Target:  5'- gUGCGGGUucagCCUGCGGCGccggcagcuagcccUGCCCG-CGu -3'
miRNA:   3'- gAUGUUCA----GGACGCUGC--------------ACGGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 17253 0.7 0.768956
Target:  5'- aCUACGGGgCCUGCGGCGgcacgcGcCCCG-CGg -3'
miRNA:   3'- -GAUGUUCaGGACGCUGCa-----C-GGGCaGC- -5'
23584 5' -55.2 NC_005261.1 + 18594 0.7 0.768956
Target:  5'- -gGCGcAGcCgUGCGAgGUGUCCGUCGc -3'
miRNA:   3'- gaUGU-UCaGgACGCUgCACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 80726 0.7 0.768956
Target:  5'- -aAgAAGgcccgCCgccGgGACGUGCCCGUCGc -3'
miRNA:   3'- gaUgUUCa----GGa--CgCUGCACGGGCAGC- -5'
23584 5' -55.2 NC_005261.1 + 118246 0.7 0.749806
Target:  5'- cCUACGccgUCUGCGGCGUGCCgGUg- -3'
miRNA:   3'- -GAUGUucaGGACGCUGCACGGgCAgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.