miRNA display CGI


Results 41 - 60 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 87720 0.66 0.981211
Target:  5'- cGGCCcugCuGCGcuGGCUgGGCGAGGCg -3'
miRNA:   3'- aCCGGca-GuCGU--UCGAgUUGCUUUGg -5'
23585 3' -51.6 NC_005261.1 + 103506 0.66 0.985881
Target:  5'- cGGCCGcCAGgGggcgccgaccgcugaGGCUCGagguGCGAGggGCCc -3'
miRNA:   3'- aCCGGCaGUCgU---------------UCGAGU----UGCUU--UGG- -5'
23585 3' -51.6 NC_005261.1 + 4195 0.66 0.979882
Target:  5'- gUGGCCGgccauggCcGCGAGCgcggCGGCGGcguaguugaggguguAGCCg -3'
miRNA:   3'- -ACCGGCa------GuCGUUCGa---GUUGCU---------------UUGG- -5'
23585 3' -51.6 NC_005261.1 + 5830 0.66 0.978957
Target:  5'- gGGCCaggcGUCGGCGgcGGCcUCGGgGAAcagcGCCg -3'
miRNA:   3'- aCCGG----CAGUCGU--UCG-AGUUgCUU----UGG- -5'
23585 3' -51.6 NC_005261.1 + 51222 0.66 0.985171
Target:  5'- gGGCCG-C-GCAcuuGGCcuUCGACGAgGGCCa -3'
miRNA:   3'- aCCGGCaGuCGU---UCG--AGUUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 52303 0.66 0.984057
Target:  5'- cUGGCCGccauccagagcacggUCgAGCAGGC-CAcCGAGGCg -3'
miRNA:   3'- -ACCGGC---------------AG-UCGUUCGaGUuGCUUUGg -5'
23585 3' -51.6 NC_005261.1 + 106023 0.66 0.982881
Target:  5'- cGGCCGgCAGCucgucgggcgccAGCUCcAGCGcgcGCCg -3'
miRNA:   3'- aCCGGCaGUCGu-----------UCGAG-UUGCuu-UGG- -5'
23585 3' -51.6 NC_005261.1 + 24613 0.66 0.985171
Target:  5'- aGGCCGUCuuGaacuuGGC-CAGCGGGugCc -3'
miRNA:   3'- aCCGGCAGu-Cgu---UCGaGUUGCUUugG- -5'
23585 3' -51.6 NC_005261.1 + 52442 0.66 0.985171
Target:  5'- cGGCCGUCuGCccAGCgaCGGCGuu-CCu -3'
miRNA:   3'- aCCGGCAGuCGu-UCGa-GUUGCuuuGG- -5'
23585 3' -51.6 NC_005261.1 + 104770 0.66 0.98328
Target:  5'- cGGCUG-CGGCGgcGGCU--GCGggGCg -3'
miRNA:   3'- aCCGGCaGUCGU--UCGAguUGCuuUGg -5'
23585 3' -51.6 NC_005261.1 + 28225 0.66 0.985171
Target:  5'- cGGCggCGcCGGCGGGCguguccaCGACGAccuGCCg -3'
miRNA:   3'- aCCG--GCaGUCGUUCGa------GUUGCUu--UGG- -5'
23585 3' -51.6 NC_005261.1 + 32486 0.66 0.985171
Target:  5'- aGGUCcccgCGcGCGAGUUCGugGAcGCCg -3'
miRNA:   3'- aCCGGca--GU-CGUUCGAGUugCUuUGG- -5'
23585 3' -51.6 NC_005261.1 + 57286 0.66 0.985171
Target:  5'- aGGCCGaguaccugcgCAGCGGGCgCAAgGugguGGCCu -3'
miRNA:   3'- aCCGGCa---------GUCGUUCGaGUUgCu---UUGG- -5'
23585 3' -51.6 NC_005261.1 + 20969 0.66 0.978957
Target:  5'- -cGCCGUCcucgaGGCGcgcGGCg-AACGAGACCc -3'
miRNA:   3'- acCGGCAG-----UCGU---UCGagUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 118364 0.66 0.978957
Target:  5'- gGGcCCGcCGGCGGGgUCucgcGCGAggaAGCCg -3'
miRNA:   3'- aCC-GGCaGUCGUUCgAGu---UGCU---UUGG- -5'
23585 3' -51.6 NC_005261.1 + 92297 0.66 0.981211
Target:  5'- cGGCCcucgcgcgCGGCGGGgaCGGCGAGGgCg -3'
miRNA:   3'- aCCGGca------GUCGUUCgaGUUGCUUUgG- -5'
23585 3' -51.6 NC_005261.1 + 104793 0.66 0.98328
Target:  5'- cGGCUG-CGGCGgcGGCUgCGGCGGcGGCUg -3'
miRNA:   3'- aCCGGCaGUCGU--UCGA-GUUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 26597 0.66 0.978957
Target:  5'- aGGCgG-CGGCGGGCggCGGCGGcacggcGCCg -3'
miRNA:   3'- aCCGgCaGUCGUUCGa-GUUGCUu-----UGG- -5'
23585 3' -51.6 NC_005261.1 + 109078 0.66 0.981211
Target:  5'- uUGGCUGgaUCcGCGGGCgggucCGGCGggGCg -3'
miRNA:   3'- -ACCGGC--AGuCGUUCGa----GUUGCuuUGg -5'
23585 3' -51.6 NC_005261.1 + 90559 0.66 0.985171
Target:  5'- cGGCCGUgCuGC--GCUCGGCGcuGCg -3'
miRNA:   3'- aCCGGCA-GuCGuuCGAGUUGCuuUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.