miRNA display CGI


Results 21 - 40 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 20059 0.66 0.985171
Target:  5'- cGGCCcagaCGGCAAGCcccgCcGCGAcGGCCa -3'
miRNA:   3'- aCCGGca--GUCGUUCGa---GuUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 118364 0.66 0.978957
Target:  5'- gGGcCCGcCGGCGGGgUCucgcGCGAggaAGCCg -3'
miRNA:   3'- aCC-GGCaGUCGUUCgAGu---UGCU---UUGG- -5'
23585 3' -51.6 NC_005261.1 + 26597 0.66 0.978957
Target:  5'- aGGCgG-CGGCGGGCggCGGCGGcacggcGCCg -3'
miRNA:   3'- aCCGgCaGUCGUUCGa-GUUGCUu-----UGG- -5'
23585 3' -51.6 NC_005261.1 + 106023 0.66 0.982881
Target:  5'- cGGCCGgCAGCucgucgggcgccAGCUCcAGCGcgcGCCg -3'
miRNA:   3'- aCCGGCaGUCGu-----------UCGAG-UUGCuu-UGG- -5'
23585 3' -51.6 NC_005261.1 + 110819 0.66 0.98328
Target:  5'- cGGCCGUCGG--GGCUCGuuugcauaaaaACauGGCCg -3'
miRNA:   3'- aCCGGCAGUCguUCGAGU-----------UGcuUUGG- -5'
23585 3' -51.6 NC_005261.1 + 24613 0.66 0.985171
Target:  5'- aGGCCGUCuuGaacuuGGC-CAGCGGGugCc -3'
miRNA:   3'- aCCGGCAGu-Cgu---UCGaGUUGCUUugG- -5'
23585 3' -51.6 NC_005261.1 + 136841 0.66 0.981211
Target:  5'- cGGCCG-CGGC--GCcCGGCGugGCCu -3'
miRNA:   3'- aCCGGCaGUCGuuCGaGUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 49507 0.66 0.98328
Target:  5'- cUGGCCcUCAucgcgcaccccGCAGGCcaggUCAACGGcGGCCu -3'
miRNA:   3'- -ACCGGcAGU-----------CGUUCG----AGUUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 32486 0.66 0.985171
Target:  5'- aGGUCcccgCGcGCGAGUUCGugGAcGCCg -3'
miRNA:   3'- aCCGGca--GU-CGUUCGAGUugCUuUGG- -5'
23585 3' -51.6 NC_005261.1 + 7655 0.66 0.98328
Target:  5'- gGGCCGcgCGGCGGcGCUuccgccCGGCGGGccGCCc -3'
miRNA:   3'- aCCGGCa-GUCGUU-CGA------GUUGCUU--UGG- -5'
23585 3' -51.6 NC_005261.1 + 74418 0.66 0.98328
Target:  5'- aGGCaGUCGGCGGcgucggguucacGCUC-ACGcAGCCg -3'
miRNA:   3'- aCCGgCAGUCGUU------------CGAGuUGCuUUGG- -5'
23585 3' -51.6 NC_005261.1 + 104793 0.66 0.98328
Target:  5'- cGGCUG-CGGCGgcGGCUgCGGCGGcGGCUg -3'
miRNA:   3'- aCCGGCaGUCGU--UCGA-GUUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 109078 0.66 0.981211
Target:  5'- uUGGCUGgaUCcGCGGGCgggucCGGCGggGCg -3'
miRNA:   3'- -ACCGGC--AGuCGUUCGa----GUUGCuuUGg -5'
23585 3' -51.6 NC_005261.1 + 1728 0.66 0.985171
Target:  5'- -cGCCGg-AGCAGGCgUCGGCGccGAGCUg -3'
miRNA:   3'- acCGGCagUCGUUCG-AGUUGC--UUUGG- -5'
23585 3' -51.6 NC_005261.1 + 57286 0.66 0.985171
Target:  5'- aGGCCGaguaccugcgCAGCGGGCgCAAgGugguGGCCu -3'
miRNA:   3'- aCCGGCa---------GUCGUUCGaGUUgCu---UUGG- -5'
23585 3' -51.6 NC_005261.1 + 15533 0.66 0.985171
Target:  5'- cGGCCGgCGGC--GCggCGAUGGAGCa -3'
miRNA:   3'- aCCGGCaGUCGuuCGa-GUUGCUUUGg -5'
23585 3' -51.6 NC_005261.1 + 104770 0.66 0.98328
Target:  5'- cGGCUG-CGGCGgcGGCU--GCGggGCg -3'
miRNA:   3'- aCCGGCaGUCGU--UCGAguUGCuuUGg -5'
23585 3' -51.6 NC_005261.1 + 87720 0.66 0.981211
Target:  5'- cGGCCcugCuGCGcuGGCUgGGCGAGGCg -3'
miRNA:   3'- aCCGGca-GuCGU--UCGAgUUGCUUUGg -5'
23585 3' -51.6 NC_005261.1 + 127314 0.66 0.98328
Target:  5'- gGGuuGUCgcGGCcGGCggCGGCGcuGCCg -3'
miRNA:   3'- aCCggCAG--UCGuUCGa-GUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 5830 0.66 0.978957
Target:  5'- gGGCCaggcGUCGGCGgcGGCcUCGGgGAAcagcGCCg -3'
miRNA:   3'- aCCGG----CAGUCGU--UCG-AGUUgCUU----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.