Results 21 - 40 of 615 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 77765 | 0.78 | 0.503799 |
Target: 5'- -aGCCGgggCGGCGGGgaCGACGAGGCCu -3' miRNA: 3'- acCGGCa--GUCGUUCgaGUUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 122594 | 0.78 | 0.5139 |
Target: 5'- cGGCCGggCGGC--GCUaCAACGGGACCg -3' miRNA: 3'- aCCGGCa-GUCGuuCGA-GUUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 45750 | 0.78 | 0.5139 |
Target: 5'- -cGCCGUCcGCGAGCUC-GCGguGCCg -3' miRNA: 3'- acCGGCAGuCGUUCGAGuUGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 91978 | 0.78 | 0.5139 |
Target: 5'- aGGCCGUCAGCAGGUggucCAGC-AGGCg -3' miRNA: 3'- aCCGGCAGUCGUUCGa---GUUGcUUUGg -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 116711 | 0.78 | 0.5139 |
Target: 5'- cGGCCGcCAGCuGGC-CGACGucGCCg -3' miRNA: 3'- aCCGGCaGUCGuUCGaGUUGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 85660 | 0.77 | 0.56551 |
Target: 5'- gUGGUCGaCGGCGAGCUCGcgcGCGAGucGCUa -3' miRNA: 3'- -ACCGGCaGUCGUUCGAGU---UGCUU--UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 50989 | 0.77 | 0.569704 |
Target: 5'- cGGCCGacggCGGCGcgugggcgcggcgggAGCUCGGCGAGcGCCa -3' miRNA: 3'- aCCGGCa---GUCGU---------------UCGAGUUGCUU-UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 71496 | 0.76 | 0.571804 |
Target: 5'- cGGCCaggugcgcgcgaaaGUCGGCGGGCUCGuccgcguACGAcGCCa -3' miRNA: 3'- aCCGG--------------CAGUCGUUCGAGU-------UGCUuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 98479 | 0.76 | 0.57601 |
Target: 5'- cGGCCGUCcuccGCGGGCUCgGGCGGGuaagguGCCg -3' miRNA: 3'- aCCGGCAGu---CGUUCGAG-UUGCUU------UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 45993 | 0.76 | 0.57601 |
Target: 5'- cUGGCCuccaUCcGCGcGCUCGGCGggGCCg -3' miRNA: 3'- -ACCGGc---AGuCGUuCGAGUUGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 2755 | 0.76 | 0.586553 |
Target: 5'- gGGCCGUCgcGGCGGGC-Cu-CGAGGCCc -3' miRNA: 3'- aCCGGCAG--UCGUUCGaGuuGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 107272 | 0.76 | 0.586553 |
Target: 5'- gGGCCGUCgcGGCGGGC-Cu-CGAGGCCc -3' miRNA: 3'- aCCGGCAG--UCGUUCGaGuuGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 98572 | 0.76 | 0.586553 |
Target: 5'- cGGCCGUCcuccGCGGGCUCGggcgaguagGCGgcGCCc -3' miRNA: 3'- aCCGGCAGu---CGUUCGAGU---------UGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 84431 | 0.76 | 0.597132 |
Target: 5'- cUGGCCGaggCGGCGGGCgaaggCGACGGcgacGACCc -3' miRNA: 3'- -ACCGGCa--GUCGUUCGa----GUUGCU----UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 83365 | 0.76 | 0.597132 |
Target: 5'- aGGCguccaCGUCGGCGAGCgCGGCGAGcgcgGCCu -3' miRNA: 3'- aCCG-----GCAGUCGUUCGaGUUGCUU----UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 97657 | 0.76 | 0.618365 |
Target: 5'- ---aCGUCAGCGAGUUCGugGAGGCg -3' miRNA: 3'- accgGCAGUCGUUCGAGUugCUUUGg -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 48315 | 0.76 | 0.618365 |
Target: 5'- gGGCgCGUCGGgccCGGGCUCGggggcgcgcgcgGCGAGGCCg -3' miRNA: 3'- aCCG-GCAGUC---GUUCGAGU------------UGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 55774 | 0.75 | 0.629002 |
Target: 5'- gGGCCGggggCGGCAacGGCggcGCGggGCCg -3' miRNA: 3'- aCCGGCa---GUCGU--UCGaguUGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 99648 | 0.75 | 0.639643 |
Target: 5'- gGGCCGcCAGCAgggagaggauuGGCUCAACcc-GCCg -3' miRNA: 3'- aCCGGCaGUCGU-----------UCGAGUUGcuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 122278 | 0.75 | 0.639643 |
Target: 5'- gGGCCGUUAGCA---UCAGCGcgGCCc -3' miRNA: 3'- aCCGGCAGUCGUucgAGUUGCuuUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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