miRNA display CGI


Results 21 - 40 of 615 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 77765 0.78 0.503799
Target:  5'- -aGCCGgggCGGCGGGgaCGACGAGGCCu -3'
miRNA:   3'- acCGGCa--GUCGUUCgaGUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 91978 0.78 0.5139
Target:  5'- aGGCCGUCAGCAGGUggucCAGC-AGGCg -3'
miRNA:   3'- aCCGGCAGUCGUUCGa---GUUGcUUUGg -5'
23585 3' -51.6 NC_005261.1 + 116711 0.78 0.5139
Target:  5'- cGGCCGcCAGCuGGC-CGACGucGCCg -3'
miRNA:   3'- aCCGGCaGUCGuUCGaGUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 122594 0.78 0.5139
Target:  5'- cGGCCGggCGGC--GCUaCAACGGGACCg -3'
miRNA:   3'- aCCGGCa-GUCGuuCGA-GUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 45750 0.78 0.5139
Target:  5'- -cGCCGUCcGCGAGCUC-GCGguGCCg -3'
miRNA:   3'- acCGGCAGuCGUUCGAGuUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 85660 0.77 0.56551
Target:  5'- gUGGUCGaCGGCGAGCUCGcgcGCGAGucGCUa -3'
miRNA:   3'- -ACCGGCaGUCGUUCGAGU---UGCUU--UGG- -5'
23585 3' -51.6 NC_005261.1 + 50989 0.77 0.569704
Target:  5'- cGGCCGacggCGGCGcgugggcgcggcgggAGCUCGGCGAGcGCCa -3'
miRNA:   3'- aCCGGCa---GUCGU---------------UCGAGUUGCUU-UGG- -5'
23585 3' -51.6 NC_005261.1 + 71496 0.76 0.571804
Target:  5'- cGGCCaggugcgcgcgaaaGUCGGCGGGCUCGuccgcguACGAcGCCa -3'
miRNA:   3'- aCCGG--------------CAGUCGUUCGAGU-------UGCUuUGG- -5'
23585 3' -51.6 NC_005261.1 + 98479 0.76 0.57601
Target:  5'- cGGCCGUCcuccGCGGGCUCgGGCGGGuaagguGCCg -3'
miRNA:   3'- aCCGGCAGu---CGUUCGAG-UUGCUU------UGG- -5'
23585 3' -51.6 NC_005261.1 + 45993 0.76 0.57601
Target:  5'- cUGGCCuccaUCcGCGcGCUCGGCGggGCCg -3'
miRNA:   3'- -ACCGGc---AGuCGUuCGAGUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 107272 0.76 0.586553
Target:  5'- gGGCCGUCgcGGCGGGC-Cu-CGAGGCCc -3'
miRNA:   3'- aCCGGCAG--UCGUUCGaGuuGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 2755 0.76 0.586553
Target:  5'- gGGCCGUCgcGGCGGGC-Cu-CGAGGCCc -3'
miRNA:   3'- aCCGGCAG--UCGUUCGaGuuGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 98572 0.76 0.586553
Target:  5'- cGGCCGUCcuccGCGGGCUCGggcgaguagGCGgcGCCc -3'
miRNA:   3'- aCCGGCAGu---CGUUCGAGU---------UGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 84431 0.76 0.597132
Target:  5'- cUGGCCGaggCGGCGGGCgaaggCGACGGcgacGACCc -3'
miRNA:   3'- -ACCGGCa--GUCGUUCGa----GUUGCU----UUGG- -5'
23585 3' -51.6 NC_005261.1 + 83365 0.76 0.597132
Target:  5'- aGGCguccaCGUCGGCGAGCgCGGCGAGcgcgGCCu -3'
miRNA:   3'- aCCG-----GCAGUCGUUCGaGUUGCUU----UGG- -5'
23585 3' -51.6 NC_005261.1 + 48315 0.76 0.618365
Target:  5'- gGGCgCGUCGGgccCGGGCUCGggggcgcgcgcgGCGAGGCCg -3'
miRNA:   3'- aCCG-GCAGUC---GUUCGAGU------------UGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 97657 0.76 0.618365
Target:  5'- ---aCGUCAGCGAGUUCGugGAGGCg -3'
miRNA:   3'- accgGCAGUCGUUCGAGUugCUUUGg -5'
23585 3' -51.6 NC_005261.1 + 55774 0.75 0.629002
Target:  5'- gGGCCGggggCGGCAacGGCggcGCGggGCCg -3'
miRNA:   3'- aCCGGCa---GUCGU--UCGaguUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 125014 0.75 0.639643
Target:  5'- gGGCCGUgcgcucCAGCAGGCUcCggUGggGCg -3'
miRNA:   3'- aCCGGCA------GUCGUUCGA-GuuGCuuUGg -5'
23585 3' -51.6 NC_005261.1 + 122278 0.75 0.639643
Target:  5'- gGGCCGUUAGCA---UCAGCGcgGCCc -3'
miRNA:   3'- aCCGGCAGUCGUucgAGUUGCuuUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.