Results 1 - 20 of 615 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 110712 | 1.14 | 0.003318 |
Target: 5'- gUGGCCGUCAGCAAGCUCAACGAAACCa -3' miRNA: 3'- -ACCGGCAGUCGUUCGAGUUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 31469 | 0.84 | 0.242489 |
Target: 5'- cUGGCCGcCGGCAAGCUCGuggcgggcGCGGAggcGCCg -3' miRNA: 3'- -ACCGGCaGUCGUUCGAGU--------UGCUU---UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 76790 | 0.84 | 0.254914 |
Target: 5'- gGGuCCGUCuGCAGGCgcauggUCAGCGAGGCCa -3' miRNA: 3'- aCC-GGCAGuCGUUCG------AGUUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 14010 | 0.83 | 0.274526 |
Target: 5'- gGGCCGcUCGGUGAGCUCugcgauggccAGCGggGCCa -3' miRNA: 3'- aCCGGC-AGUCGUUCGAG----------UUGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 125715 | 0.82 | 0.324941 |
Target: 5'- cGGCCG-CcGCGGGCUCGGCuGggGCCg -3' miRNA: 3'- aCCGGCaGuCGUUCGAGUUG-CuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 15889 | 0.81 | 0.332681 |
Target: 5'- cGGCCGcCAgGCGAGCUCuGCGAGcGCCa -3' miRNA: 3'- aCCGGCaGU-CGUUCGAGuUGCUU-UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 121519 | 0.81 | 0.33897 |
Target: 5'- gGGCCGUCgauGGCGAGCUCcucgucgcuguCGGAGCCg -3' miRNA: 3'- aCCGGCAG---UCGUUCGAGuu---------GCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 5508 | 0.81 | 0.373387 |
Target: 5'- gGGCCG-CGGC-AGCggCGGCGAGGCCg -3' miRNA: 3'- aCCGGCaGUCGuUCGa-GUUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 110025 | 0.81 | 0.373387 |
Target: 5'- gGGCCG-CGGC-AGCggCGGCGAGGCCg -3' miRNA: 3'- aCCGGCaGUCGuUCGa-GUUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 20017 | 0.81 | 0.373387 |
Target: 5'- cGGCCGUCAGCGccccgcgcAGCgcggCAggcGCGggGCCc -3' miRNA: 3'- aCCGGCAGUCGU--------UCGa---GU---UGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 97701 | 0.8 | 0.37935 |
Target: 5'- aUGGCCGUCAGCGucgacuacggcaucAGCUCGAagcuGGCCa -3' miRNA: 3'- -ACCGGCAGUCGU--------------UCGAGUUgcu-UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 12785 | 0.8 | 0.399383 |
Target: 5'- gGGCuCGUCGGCGAGCUCGucgucgGCGucgcuGCCg -3' miRNA: 3'- aCCG-GCAGUCGUUCGAGU------UGCuu---UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 121456 | 0.8 | 0.417345 |
Target: 5'- gGGCCGUCgauGGCGAGCUCcuCGGcguACCg -3' miRNA: 3'- aCCGGCAG---UCGUUCGAGuuGCUu--UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 79418 | 0.79 | 0.445187 |
Target: 5'- aGGCCcguGUCGGCGAGCUCGGCGcgcguguacACCu -3' miRNA: 3'- aCCGG---CAGUCGUUCGAGUUGCuu-------UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 29927 | 0.79 | 0.453741 |
Target: 5'- cGGCCGUCugggacccgugcaGGCGAGCgCAACGccGGACCa -3' miRNA: 3'- aCCGGCAG-------------UCGUUCGaGUUGC--UUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 58569 | 0.79 | 0.454697 |
Target: 5'- gUGGCCGcgagCGGCGAGC---GCGAGACCu -3' miRNA: 3'- -ACCGGCa---GUCGUUCGaguUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 78308 | 0.79 | 0.464316 |
Target: 5'- aUGGCCGaCGGCGAGCUCGuCGAccuGCUc -3' miRNA: 3'- -ACCGGCaGUCGUUCGAGUuGCUu--UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 115594 | 0.78 | 0.474039 |
Target: 5'- cUGGCCGUacGUGAGCccCAGCGAGGCCa -3' miRNA: 3'- -ACCGGCAguCGUUCGa-GUUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 109053 | 0.78 | 0.474039 |
Target: 5'- cGGCCGcCAGguAGCcCAGCGgcGCCu -3' miRNA: 3'- aCCGGCaGUCguUCGaGUUGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 53588 | 0.78 | 0.483864 |
Target: 5'- gGGCCGgCGGCGccccAGCggacCGACGAGGCCg -3' miRNA: 3'- aCCGGCaGUCGU----UCGa---GUUGCUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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