miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 110712 1.14 0.003318
Target:  5'- gUGGCCGUCAGCAAGCUCAACGAAACCa -3'
miRNA:   3'- -ACCGGCAGUCGUUCGAGUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 31469 0.84 0.242489
Target:  5'- cUGGCCGcCGGCAAGCUCGuggcgggcGCGGAggcGCCg -3'
miRNA:   3'- -ACCGGCaGUCGUUCGAGU--------UGCUU---UGG- -5'
23585 3' -51.6 NC_005261.1 + 76790 0.84 0.254914
Target:  5'- gGGuCCGUCuGCAGGCgcauggUCAGCGAGGCCa -3'
miRNA:   3'- aCC-GGCAGuCGUUCG------AGUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 14010 0.83 0.274526
Target:  5'- gGGCCGcUCGGUGAGCUCugcgauggccAGCGggGCCa -3'
miRNA:   3'- aCCGGC-AGUCGUUCGAG----------UUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 125715 0.82 0.324941
Target:  5'- cGGCCG-CcGCGGGCUCGGCuGggGCCg -3'
miRNA:   3'- aCCGGCaGuCGUUCGAGUUG-CuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 15889 0.81 0.332681
Target:  5'- cGGCCGcCAgGCGAGCUCuGCGAGcGCCa -3'
miRNA:   3'- aCCGGCaGU-CGUUCGAGuUGCUU-UGG- -5'
23585 3' -51.6 NC_005261.1 + 121519 0.81 0.33897
Target:  5'- gGGCCGUCgauGGCGAGCUCcucgucgcuguCGGAGCCg -3'
miRNA:   3'- aCCGGCAG---UCGUUCGAGuu---------GCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 5508 0.81 0.373387
Target:  5'- gGGCCG-CGGC-AGCggCGGCGAGGCCg -3'
miRNA:   3'- aCCGGCaGUCGuUCGa-GUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 110025 0.81 0.373387
Target:  5'- gGGCCG-CGGC-AGCggCGGCGAGGCCg -3'
miRNA:   3'- aCCGGCaGUCGuUCGa-GUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 20017 0.81 0.373387
Target:  5'- cGGCCGUCAGCGccccgcgcAGCgcggCAggcGCGggGCCc -3'
miRNA:   3'- aCCGGCAGUCGU--------UCGa---GU---UGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 97701 0.8 0.37935
Target:  5'- aUGGCCGUCAGCGucgacuacggcaucAGCUCGAagcuGGCCa -3'
miRNA:   3'- -ACCGGCAGUCGU--------------UCGAGUUgcu-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 12785 0.8 0.399383
Target:  5'- gGGCuCGUCGGCGAGCUCGucgucgGCGucgcuGCCg -3'
miRNA:   3'- aCCG-GCAGUCGUUCGAGU------UGCuu---UGG- -5'
23585 3' -51.6 NC_005261.1 + 121456 0.8 0.417345
Target:  5'- gGGCCGUCgauGGCGAGCUCcuCGGcguACCg -3'
miRNA:   3'- aCCGGCAG---UCGUUCGAGuuGCUu--UGG- -5'
23585 3' -51.6 NC_005261.1 + 79418 0.79 0.445187
Target:  5'- aGGCCcguGUCGGCGAGCUCGGCGcgcguguacACCu -3'
miRNA:   3'- aCCGG---CAGUCGUUCGAGUUGCuu-------UGG- -5'
23585 3' -51.6 NC_005261.1 + 29927 0.79 0.453741
Target:  5'- cGGCCGUCugggacccgugcaGGCGAGCgCAACGccGGACCa -3'
miRNA:   3'- aCCGGCAG-------------UCGUUCGaGUUGC--UUUGG- -5'
23585 3' -51.6 NC_005261.1 + 58569 0.79 0.454697
Target:  5'- gUGGCCGcgagCGGCGAGC---GCGAGACCu -3'
miRNA:   3'- -ACCGGCa---GUCGUUCGaguUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 78308 0.79 0.464316
Target:  5'- aUGGCCGaCGGCGAGCUCGuCGAccuGCUc -3'
miRNA:   3'- -ACCGGCaGUCGUUCGAGUuGCUu--UGG- -5'
23585 3' -51.6 NC_005261.1 + 109053 0.78 0.474039
Target:  5'- cGGCCGcCAGguAGCcCAGCGgcGCCu -3'
miRNA:   3'- aCCGGCaGUCguUCGaGUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 115594 0.78 0.474039
Target:  5'- cUGGCCGUacGUGAGCccCAGCGAGGCCa -3'
miRNA:   3'- -ACCGGCAguCGUUCGa-GUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 53588 0.78 0.483864
Target:  5'- gGGCCGgCGGCGccccAGCggacCGACGAGGCCg -3'
miRNA:   3'- aCCGGCaGUCGU----UCGa---GUUGCUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.