miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 76790 0.84 0.254914
Target:  5'- gGGuCCGUCuGCAGGCgcauggUCAGCGAGGCCa -3'
miRNA:   3'- aCC-GGCAGuCGUUCG------AGUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 135394 0.75 0.660895
Target:  5'- gGGCCGcCGGCccugccgcccGAGCUCGGgcUGggGCCg -3'
miRNA:   3'- aCCGGCaGUCG----------UUCGAGUU--GCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 78554 0.75 0.660895
Target:  5'- cUGGCCGagGGC-GGCuUCGACGAcccGGCCg -3'
miRNA:   3'- -ACCGGCagUCGuUCG-AGUUGCU---UUGG- -5'
23585 3' -51.6 NC_005261.1 + 39459 0.75 0.650276
Target:  5'- cGGCCGgCGGCcGGCggcggCAGCGGcAACCg -3'
miRNA:   3'- aCCGGCaGUCGuUCGa----GUUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 99648 0.75 0.639643
Target:  5'- gGGCCGcCAGCAgggagaggauuGGCUCAACcc-GCCg -3'
miRNA:   3'- aCCGGCaGUCGU-----------UCGAGUUGcuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 55774 0.75 0.629002
Target:  5'- gGGCCGggggCGGCAacGGCggcGCGggGCCg -3'
miRNA:   3'- aCCGGCa---GUCGU--UCGaguUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 97657 0.76 0.618365
Target:  5'- ---aCGUCAGCGAGUUCGugGAGGCg -3'
miRNA:   3'- accgGCAGUCGUUCGAGUugCUUUGg -5'
23585 3' -51.6 NC_005261.1 + 84431 0.76 0.597132
Target:  5'- cUGGCCGaggCGGCGGGCgaaggCGACGGcgacGACCc -3'
miRNA:   3'- -ACCGGCa--GUCGUUCGa----GUUGCU----UUGG- -5'
23585 3' -51.6 NC_005261.1 + 107272 0.76 0.586553
Target:  5'- gGGCCGUCgcGGCGGGC-Cu-CGAGGCCc -3'
miRNA:   3'- aCCGGCAG--UCGUUCGaGuuGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 45993 0.76 0.57601
Target:  5'- cUGGCCuccaUCcGCGcGCUCGGCGggGCCg -3'
miRNA:   3'- -ACCGGc---AGuCGUuCGAGUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 85660 0.77 0.56551
Target:  5'- gUGGUCGaCGGCGAGCUCGcgcGCGAGucGCUa -3'
miRNA:   3'- -ACCGGCaGUCGUUCGAGU---UGCUU--UGG- -5'
23585 3' -51.6 NC_005261.1 + 45750 0.78 0.5139
Target:  5'- -cGCCGUCcGCGAGCUC-GCGguGCCg -3'
miRNA:   3'- acCGGCAGuCGUUCGAGuUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 122594 0.78 0.5139
Target:  5'- cGGCCGggCGGC--GCUaCAACGGGACCg -3'
miRNA:   3'- aCCGGCa-GUCGuuCGA-GUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 78308 0.79 0.464316
Target:  5'- aUGGCCGaCGGCGAGCUCGuCGAccuGCUc -3'
miRNA:   3'- -ACCGGCaGUCGUUCGAGUuGCUu--UGG- -5'
23585 3' -51.6 NC_005261.1 + 29927 0.79 0.453741
Target:  5'- cGGCCGUCugggacccgugcaGGCGAGCgCAACGccGGACCa -3'
miRNA:   3'- aCCGGCAG-------------UCGUUCGaGUUGC--UUUGG- -5'
23585 3' -51.6 NC_005261.1 + 97701 0.8 0.37935
Target:  5'- aUGGCCGUCAGCGucgacuacggcaucAGCUCGAagcuGGCCa -3'
miRNA:   3'- -ACCGGCAGUCGU--------------UCGAGUUgcu-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 110025 0.81 0.373387
Target:  5'- gGGCCG-CGGC-AGCggCGGCGAGGCCg -3'
miRNA:   3'- aCCGGCaGUCGuUCGa-GUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 20017 0.81 0.373387
Target:  5'- cGGCCGUCAGCGccccgcgcAGCgcggCAggcGCGggGCCc -3'
miRNA:   3'- aCCGGCAGUCGU--------UCGa---GU---UGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 15889 0.81 0.332681
Target:  5'- cGGCCGcCAgGCGAGCUCuGCGAGcGCCa -3'
miRNA:   3'- aCCGGCaGU-CGUUCGAGuUGCUU-UGG- -5'
23585 3' -51.6 NC_005261.1 + 31469 0.84 0.242489
Target:  5'- cUGGCCGcCGGCAAGCUCGuggcgggcGCGGAggcGCCg -3'
miRNA:   3'- -ACCGGCaGUCGUUCGAGU--------UGCUU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.