miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 252 0.66 0.98328
Target:  5'- cGGCUG-CGGCGgcGGCUgCGGCGGcGGCUg -3'
miRNA:   3'- aCCGGCaGUCGU--UCGA-GUUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 288 0.66 0.98328
Target:  5'- cGGCUG-CGGCGgcGGCUgCGGCGGcGGCUg -3'
miRNA:   3'- aCCGGCaGUCGU--UCGA-GUUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 324 0.67 0.964608
Target:  5'- cGGCUG-CGGCGgcGGCUgCGGCGGcccgcAGCCc -3'
miRNA:   3'- aCCGGCaGUCGU--UCGA-GUUGCU-----UUGG- -5'
23585 3' -51.6 NC_005261.1 + 1237 0.66 0.985171
Target:  5'- cGGCCG-CAcgaucgaccuGcCAGGCgggGACGAGGCCg -3'
miRNA:   3'- aCCGGCaGU----------C-GUUCGag-UUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 1407 0.68 0.957296
Target:  5'- cGGCCG-CGGCGgcGGCgggGGCGgcGCCc -3'
miRNA:   3'- aCCGGCaGUCGU--UCGag-UUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 1506 0.66 0.982881
Target:  5'- cGGCCGgCAGCucgucgggcgccAGCUCcAGCGcgcGCCg -3'
miRNA:   3'- aCCGGCaGUCGu-----------UCGAG-UUGCuu-UGG- -5'
23585 3' -51.6 NC_005261.1 + 1728 0.66 0.985171
Target:  5'- -cGCCGg-AGCAGGCgUCGGCGccGAGCUg -3'
miRNA:   3'- acCGGCagUCGUUCG-AGUUGC--UUUGG- -5'
23585 3' -51.6 NC_005261.1 + 1988 0.67 0.964608
Target:  5'- gGGCCaUCGGCGgccAGUUC-GCGggGuCCa -3'
miRNA:   3'- aCCGGcAGUCGU---UCGAGuUGCuuU-GG- -5'
23585 3' -51.6 NC_005261.1 + 2168 0.66 0.981211
Target:  5'- cGGCCcaggcgugcgaGUCGGC--GCUCAGCaGcAGCCg -3'
miRNA:   3'- aCCGG-----------CAGUCGuuCGAGUUG-CuUUGG- -5'
23585 3' -51.6 NC_005261.1 + 2259 0.68 0.9445
Target:  5'- aGGCCGcCGGC--GCUCGuccucgccggGCGgcGCCg -3'
miRNA:   3'- aCCGGCaGUCGuuCGAGU----------UGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 2589 0.67 0.970994
Target:  5'- cGGCaCG-CGGCGgaAGCcgccgucggCGGCGggGCCg -3'
miRNA:   3'- aCCG-GCaGUCGU--UCGa--------GUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 2755 0.76 0.586553
Target:  5'- gGGCCGUCgcGGCGGGC-Cu-CGAGGCCc -3'
miRNA:   3'- aCCGGCAG--UCGUUCGaGuuGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 2814 0.7 0.885266
Target:  5'- gGGCCGggCGGCcccagcccGAGCUCgGGCGGcagGGCCg -3'
miRNA:   3'- aCCGGCa-GUCG--------UUCGAG-UUGCU---UUGG- -5'
23585 3' -51.6 NC_005261.1 + 3059 0.71 0.84643
Target:  5'- cGaGCCG-CAGCGAGCUCccgaucgagcgGGCGGAGgCg -3'
miRNA:   3'- aC-CGGCaGUCGUUCGAG-----------UUGCUUUgG- -5'
23585 3' -51.6 NC_005261.1 + 3535 0.69 0.912026
Target:  5'- cGGCCGccUCGGCGcgcAGCgCGGCGGGcgcggcGCCg -3'
miRNA:   3'- aCCGGC--AGUCGU---UCGaGUUGCUU------UGG- -5'
23585 3' -51.6 NC_005261.1 + 3601 0.67 0.973857
Target:  5'- gGGCCGcgccaAGC-AGCUCAGCu--GCCc -3'
miRNA:   3'- aCCGGCag---UCGuUCGAGUUGcuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 3732 0.69 0.923882
Target:  5'- aGGCUGUgcucguagugCAGC-AGCgCGACGAcGCCg -3'
miRNA:   3'- aCCGGCA----------GUCGuUCGaGUUGCUuUGG- -5'
23585 3' -51.6 NC_005261.1 + 3781 0.72 0.820553
Target:  5'- aGGCCG-CAGCGcagcgguccgccAGCUCG-CGcAGCCg -3'
miRNA:   3'- aCCGGCaGUCGU------------UCGAGUuGCuUUGG- -5'
23585 3' -51.6 NC_005261.1 + 3870 0.73 0.773851
Target:  5'- cGGCCGgcgagcaCGGCGcgcAGCUCGGCGAGcgcggcgcgggcGCCc -3'
miRNA:   3'- aCCGGCa------GUCGU---UCGAGUUGCUU------------UGG- -5'
23585 3' -51.6 NC_005261.1 + 3891 0.68 0.939731
Target:  5'- cGGCgCGggGGCuuGCgguacagCAGCGAGACCa -3'
miRNA:   3'- aCCG-GCagUCGuuCGa------GUUGCUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.