Results 1 - 20 of 615 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 252 | 0.66 | 0.98328 |
Target: 5'- cGGCUG-CGGCGgcGGCUgCGGCGGcGGCUg -3' miRNA: 3'- aCCGGCaGUCGU--UCGA-GUUGCU-UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 288 | 0.66 | 0.98328 |
Target: 5'- cGGCUG-CGGCGgcGGCUgCGGCGGcGGCUg -3' miRNA: 3'- aCCGGCaGUCGU--UCGA-GUUGCU-UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 324 | 0.67 | 0.964608 |
Target: 5'- cGGCUG-CGGCGgcGGCUgCGGCGGcccgcAGCCc -3' miRNA: 3'- aCCGGCaGUCGU--UCGA-GUUGCU-----UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 1237 | 0.66 | 0.985171 |
Target: 5'- cGGCCG-CAcgaucgaccuGcCAGGCgggGACGAGGCCg -3' miRNA: 3'- aCCGGCaGU----------C-GUUCGag-UUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 1407 | 0.68 | 0.957296 |
Target: 5'- cGGCCG-CGGCGgcGGCgggGGCGgcGCCc -3' miRNA: 3'- aCCGGCaGUCGU--UCGag-UUGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 1506 | 0.66 | 0.982881 |
Target: 5'- cGGCCGgCAGCucgucgggcgccAGCUCcAGCGcgcGCCg -3' miRNA: 3'- aCCGGCaGUCGu-----------UCGAG-UUGCuu-UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 1728 | 0.66 | 0.985171 |
Target: 5'- -cGCCGg-AGCAGGCgUCGGCGccGAGCUg -3' miRNA: 3'- acCGGCagUCGUUCG-AGUUGC--UUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 1988 | 0.67 | 0.964608 |
Target: 5'- gGGCCaUCGGCGgccAGUUC-GCGggGuCCa -3' miRNA: 3'- aCCGGcAGUCGU---UCGAGuUGCuuU-GG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 2168 | 0.66 | 0.981211 |
Target: 5'- cGGCCcaggcgugcgaGUCGGC--GCUCAGCaGcAGCCg -3' miRNA: 3'- aCCGG-----------CAGUCGuuCGAGUUG-CuUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 2259 | 0.68 | 0.9445 |
Target: 5'- aGGCCGcCGGC--GCUCGuccucgccggGCGgcGCCg -3' miRNA: 3'- aCCGGCaGUCGuuCGAGU----------UGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 2589 | 0.67 | 0.970994 |
Target: 5'- cGGCaCG-CGGCGgaAGCcgccgucggCGGCGggGCCg -3' miRNA: 3'- aCCG-GCaGUCGU--UCGa--------GUUGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 2755 | 0.76 | 0.586553 |
Target: 5'- gGGCCGUCgcGGCGGGC-Cu-CGAGGCCc -3' miRNA: 3'- aCCGGCAG--UCGUUCGaGuuGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 2814 | 0.7 | 0.885266 |
Target: 5'- gGGCCGggCGGCcccagcccGAGCUCgGGCGGcagGGCCg -3' miRNA: 3'- aCCGGCa-GUCG--------UUCGAG-UUGCU---UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 3059 | 0.71 | 0.84643 |
Target: 5'- cGaGCCG-CAGCGAGCUCccgaucgagcgGGCGGAGgCg -3' miRNA: 3'- aC-CGGCaGUCGUUCGAG-----------UUGCUUUgG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 3535 | 0.69 | 0.912026 |
Target: 5'- cGGCCGccUCGGCGcgcAGCgCGGCGGGcgcggcGCCg -3' miRNA: 3'- aCCGGC--AGUCGU---UCGaGUUGCUU------UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 3601 | 0.67 | 0.973857 |
Target: 5'- gGGCCGcgccaAGC-AGCUCAGCu--GCCc -3' miRNA: 3'- aCCGGCag---UCGuUCGAGUUGcuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 3732 | 0.69 | 0.923882 |
Target: 5'- aGGCUGUgcucguagugCAGC-AGCgCGACGAcGCCg -3' miRNA: 3'- aCCGGCA----------GUCGuUCGaGUUGCUuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 3781 | 0.72 | 0.820553 |
Target: 5'- aGGCCG-CAGCGcagcgguccgccAGCUCG-CGcAGCCg -3' miRNA: 3'- aCCGGCaGUCGU------------UCGAGUuGCuUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 3870 | 0.73 | 0.773851 |
Target: 5'- cGGCCGgcgagcaCGGCGcgcAGCUCGGCGAGcgcggcgcgggcGCCc -3' miRNA: 3'- aCCGGCa------GUCGU---UCGAGUUGCUU------------UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 3891 | 0.68 | 0.939731 |
Target: 5'- cGGCgCGggGGCuuGCgguacagCAGCGAGACCa -3' miRNA: 3'- aCCG-GCagUCGuuCGa------GUUGCUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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