miRNA display CGI


Results 21 - 40 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 4195 0.66 0.979882
Target:  5'- gUGGCCGgccauggCcGCGAGCgcggCGGCGGcguaguugaggguguAGCCg -3'
miRNA:   3'- -ACCGGCa------GuCGUUCGa---GUUGCU---------------UUGG- -5'
23585 3' -51.6 NC_005261.1 + 4440 0.69 0.929423
Target:  5'- aGGgCGUCAGCAgcgGGCccucCAGCGGcggcGGCCc -3'
miRNA:   3'- aCCgGCAGUCGU---UCGa---GUUGCU----UUGG- -5'
23585 3' -51.6 NC_005261.1 + 4506 0.66 0.986895
Target:  5'- gGGCCccaGUCGcgcgcccgcGCGGGCgccgCGGCGAGggcGCCg -3'
miRNA:   3'- aCCGG---CAGU---------CGUUCGa---GUUGCUU---UGG- -5'
23585 3' -51.6 NC_005261.1 + 4561 0.66 0.981211
Target:  5'- uUGGCUGgaUCcGCGGGCgggucCGGCGggGCg -3'
miRNA:   3'- -ACCGGC--AGuCGUUCGa----GUUGCuuUGg -5'
23585 3' -51.6 NC_005261.1 + 4641 0.72 0.811546
Target:  5'- gGGCCGUgAGCAGcGC-CAGCGcgGCa -3'
miRNA:   3'- aCCGGCAgUCGUU-CGaGUUGCuuUGg -5'
23585 3' -51.6 NC_005261.1 + 4794 0.67 0.973857
Target:  5'- aGGCgGUCGuGCGAGUcaacacUgAGCGAcACCa -3'
miRNA:   3'- aCCGgCAGU-CGUUCG------AgUUGCUuUGG- -5'
23585 3' -51.6 NC_005261.1 + 4861 0.68 0.949015
Target:  5'- gGGCCG-CGcGCAGGCagc-CGAAGCCc -3'
miRNA:   3'- aCCGGCaGU-CGUUCGaguuGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 5025 0.69 0.923882
Target:  5'- cGGCCucgacggcGUCGGCGAugaacucCUCGACGgcGCCg -3'
miRNA:   3'- aCCGG--------CAGUCGUUc------GAGUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 5209 0.66 0.986895
Target:  5'- gGGCCGaggUCcGCGGaCUCGAUGAggUCg -3'
miRNA:   3'- aCCGGC---AGuCGUUcGAGUUGCUuuGG- -5'
23585 3' -51.6 NC_005261.1 + 5280 0.69 0.934706
Target:  5'- cGGCCacGUCGGCGcagcGCUCG--GGGACCa -3'
miRNA:   3'- aCCGG--CAGUCGUu---CGAGUugCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 5508 0.81 0.373387
Target:  5'- gGGCCG-CGGC-AGCggCGGCGAGGCCg -3'
miRNA:   3'- aCCGGCaGUCGuUCGa-GUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 5830 0.66 0.978957
Target:  5'- gGGCCaggcGUCGGCGgcGGCcUCGGgGAAcagcGCCg -3'
miRNA:   3'- aCCGG----CAGUCGU--UCG-AGUUgCUU----UGG- -5'
23585 3' -51.6 NC_005261.1 + 5913 0.71 0.862645
Target:  5'- cGGCCGgcuggcUAGCucGCUCGACGGcaaGGCUg -3'
miRNA:   3'- aCCGGCa-----GUCGuuCGAGUUGCU---UUGG- -5'
23585 3' -51.6 NC_005261.1 + 5955 0.66 0.985171
Target:  5'- aGGCCGgcuGGCuggcuAGCUCGGCuccucuGCCg -3'
miRNA:   3'- aCCGGCag-UCGu----UCGAGUUGcuu---UGG- -5'
23585 3' -51.6 NC_005261.1 + 6142 0.68 0.957296
Target:  5'- cGGCCGcccuccgCGGC-AGCggCGACGGcGGCCg -3'
miRNA:   3'- aCCGGCa------GUCGuUCGa-GUUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 6264 0.67 0.964265
Target:  5'- gUGGCCGcgCGGC-AGCUCcacccgguaGACGGGcgcgggcACCg -3'
miRNA:   3'- -ACCGGCa-GUCGuUCGAG---------UUGCUU-------UGG- -5'
23585 3' -51.6 NC_005261.1 + 6302 0.66 0.98328
Target:  5'- cGGCCGUCGG--GGCUCGuuugcauaaaaACauGGCCg -3'
miRNA:   3'- aCCGGCAGUCguUCGAGU-----------UGcuUUGG- -5'
23585 3' -51.6 NC_005261.1 + 6429 0.68 0.939731
Target:  5'- cGcGCCGUCaggcgcGGCGGGCgcggCGuCGggGCCc -3'
miRNA:   3'- aC-CGGCAG------UCGUUCGa---GUuGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 6659 0.7 0.899146
Target:  5'- cGGCCGUCgcGGgGGGCagccgggCGACGGcGACCg -3'
miRNA:   3'- aCCGGCAG--UCgUUCGa------GUUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 7655 0.66 0.98328
Target:  5'- gGGCCGcgCGGCGGcGCUuccgccCGGCGGGccGCCc -3'
miRNA:   3'- aCCGGCa-GUCGUU-CGA------GUUGCUU--UGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.