Results 21 - 40 of 615 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 4195 | 0.66 | 0.979882 |
Target: 5'- gUGGCCGgccauggCcGCGAGCgcggCGGCGGcguaguugaggguguAGCCg -3' miRNA: 3'- -ACCGGCa------GuCGUUCGa---GUUGCU---------------UUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 4440 | 0.69 | 0.929423 |
Target: 5'- aGGgCGUCAGCAgcgGGCccucCAGCGGcggcGGCCc -3' miRNA: 3'- aCCgGCAGUCGU---UCGa---GUUGCU----UUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 4506 | 0.66 | 0.986895 |
Target: 5'- gGGCCccaGUCGcgcgcccgcGCGGGCgccgCGGCGAGggcGCCg -3' miRNA: 3'- aCCGG---CAGU---------CGUUCGa---GUUGCUU---UGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 4561 | 0.66 | 0.981211 |
Target: 5'- uUGGCUGgaUCcGCGGGCgggucCGGCGggGCg -3' miRNA: 3'- -ACCGGC--AGuCGUUCGa----GUUGCuuUGg -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 4641 | 0.72 | 0.811546 |
Target: 5'- gGGCCGUgAGCAGcGC-CAGCGcgGCa -3' miRNA: 3'- aCCGGCAgUCGUU-CGaGUUGCuuUGg -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 4794 | 0.67 | 0.973857 |
Target: 5'- aGGCgGUCGuGCGAGUcaacacUgAGCGAcACCa -3' miRNA: 3'- aCCGgCAGU-CGUUCG------AgUUGCUuUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 4861 | 0.68 | 0.949015 |
Target: 5'- gGGCCG-CGcGCAGGCagc-CGAAGCCc -3' miRNA: 3'- aCCGGCaGU-CGUUCGaguuGCUUUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 5025 | 0.69 | 0.923882 |
Target: 5'- cGGCCucgacggcGUCGGCGAugaacucCUCGACGgcGCCg -3' miRNA: 3'- aCCGG--------CAGUCGUUc------GAGUUGCuuUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 5209 | 0.66 | 0.986895 |
Target: 5'- gGGCCGaggUCcGCGGaCUCGAUGAggUCg -3' miRNA: 3'- aCCGGC---AGuCGUUcGAGUUGCUuuGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 5280 | 0.69 | 0.934706 |
Target: 5'- cGGCCacGUCGGCGcagcGCUCG--GGGACCa -3' miRNA: 3'- aCCGG--CAGUCGUu---CGAGUugCUUUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 5508 | 0.81 | 0.373387 |
Target: 5'- gGGCCG-CGGC-AGCggCGGCGAGGCCg -3' miRNA: 3'- aCCGGCaGUCGuUCGa-GUUGCUUUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 5830 | 0.66 | 0.978957 |
Target: 5'- gGGCCaggcGUCGGCGgcGGCcUCGGgGAAcagcGCCg -3' miRNA: 3'- aCCGG----CAGUCGU--UCG-AGUUgCUU----UGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 5913 | 0.71 | 0.862645 |
Target: 5'- cGGCCGgcuggcUAGCucGCUCGACGGcaaGGCUg -3' miRNA: 3'- aCCGGCa-----GUCGuuCGAGUUGCU---UUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 5955 | 0.66 | 0.985171 |
Target: 5'- aGGCCGgcuGGCuggcuAGCUCGGCuccucuGCCg -3' miRNA: 3'- aCCGGCag-UCGu----UCGAGUUGcuu---UGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 6142 | 0.68 | 0.957296 |
Target: 5'- cGGCCGcccuccgCGGC-AGCggCGACGGcGGCCg -3' miRNA: 3'- aCCGGCa------GUCGuUCGa-GUUGCU-UUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 6264 | 0.67 | 0.964265 |
Target: 5'- gUGGCCGcgCGGC-AGCUCcacccgguaGACGGGcgcgggcACCg -3' miRNA: 3'- -ACCGGCa-GUCGuUCGAG---------UUGCUU-------UGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 6302 | 0.66 | 0.98328 |
Target: 5'- cGGCCGUCGG--GGCUCGuuugcauaaaaACauGGCCg -3' miRNA: 3'- aCCGGCAGUCguUCGAGU-----------UGcuUUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 6429 | 0.68 | 0.939731 |
Target: 5'- cGcGCCGUCaggcgcGGCGGGCgcggCGuCGggGCCc -3' miRNA: 3'- aC-CGGCAG------UCGUUCGa---GUuGCuuUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 6659 | 0.7 | 0.899146 |
Target: 5'- cGGCCGUCgcGGgGGGCagccgggCGACGGcGACCg -3' miRNA: 3'- aCCGGCAG--UCgUUCGa------GUUGCU-UUGG- -5' |
|||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 7655 | 0.66 | 0.98328 |
Target: 5'- gGGCCGcgCGGCGGcGCUuccgccCGGCGGGccGCCc -3' miRNA: 3'- aCCGGCa-GUCGUU-CGA------GUUGCUU--UGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home