Results 1 - 20 of 615 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 47027 | 0.66 | 0.98328 |
Target: 5'- gGGCC-UCGGCcAGCaCGgcgccgaagcgcGCGAAGCCc -3' miRNA: 3'- aCCGGcAGUCGuUCGaGU------------UGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 74418 | 0.66 | 0.98328 |
Target: 5'- aGGCaGUCGGCGGcgucggguucacGCUC-ACGcAGCCg -3' miRNA: 3'- aCCGgCAGUCGUU------------CGAGuUGCuUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 136841 | 0.66 | 0.981211 |
Target: 5'- cGGCCG-CGGC--GCcCGGCGugGCCu -3' miRNA: 3'- aCCGGCaGUCGuuCGaGUUGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 87720 | 0.66 | 0.981211 |
Target: 5'- cGGCCcugCuGCGcuGGCUgGGCGAGGCg -3' miRNA: 3'- aCCGGca-GuCGU--UCGAgUUGCUUUGg -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 119025 | 0.66 | 0.981211 |
Target: 5'- -uGCCGaggCAGCGGGCcUgGGCGAAGgCg -3' miRNA: 3'- acCGGCa--GUCGUUCG-AgUUGCUUUgG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 7655 | 0.66 | 0.98328 |
Target: 5'- gGGCCGcgCGGCGGcGCUuccgccCGGCGGGccGCCc -3' miRNA: 3'- aCCGGCa-GUCGUU-CGA------GUUGCUU--UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 116966 | 0.66 | 0.978957 |
Target: 5'- aGGCCGUCcuCGuGCUCGuuGCGGcacgcccugaaaAGCCg -3' miRNA: 3'- aCCGGCAGucGUuCGAGU--UGCU------------UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 20969 | 0.66 | 0.978957 |
Target: 5'- -cGCCGUCcucgaGGCGcgcGGCg-AACGAGACCc -3' miRNA: 3'- acCGGCAG-----UCGU---UCGagUUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 106686 | 0.66 | 0.981211 |
Target: 5'- cGGCCcaggcgugcgaGUCGGC--GCUCAGCaGcAGCCg -3' miRNA: 3'- aCCGG-----------CAGUCGuuCGAGUUG-CuUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 97161 | 0.66 | 0.98328 |
Target: 5'- gGGCUGgCGGCGgaccgcgccgccGGCUC--UGAGGCCg -3' miRNA: 3'- aCCGGCaGUCGU------------UCGAGuuGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 109078 | 0.66 | 0.981211 |
Target: 5'- uUGGCUGgaUCcGCGGGCgggucCGGCGggGCg -3' miRNA: 3'- -ACCGGC--AGuCGUUCGa----GUUGCuuUGg -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 106023 | 0.66 | 0.982881 |
Target: 5'- cGGCCGgCAGCucgucgggcgccAGCUCcAGCGcgcGCCg -3' miRNA: 3'- aCCGGCaGUCGu-----------UCGAG-UUGCuu-UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 53662 | 0.66 | 0.981211 |
Target: 5'- cGGCCGUCuacggGGCcguGCUCcaGGCGcuGGGCCc -3' miRNA: 3'- aCCGGCAG-----UCGuu-CGAG--UUGC--UUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 26597 | 0.66 | 0.978957 |
Target: 5'- aGGCgG-CGGCGGGCggCGGCGGcacggcGCCg -3' miRNA: 3'- aCCGgCaGUCGUUCGa-GUUGCUu-----UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 5830 | 0.66 | 0.978957 |
Target: 5'- gGGCCaggcGUCGGCGgcGGCcUCGGgGAAcagcGCCg -3' miRNA: 3'- aCCGG----CAGUCGU--UCG-AGUUgCUU----UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 4195 | 0.66 | 0.979882 |
Target: 5'- gUGGCCGgccauggCcGCGAGCgcggCGGCGGcguaguugaggguguAGCCg -3' miRNA: 3'- -ACCGGCa------GuCGUUCGa---GUUGCU---------------UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 126331 | 0.66 | 0.978957 |
Target: 5'- gGGCCGggcccgCGGCGGGCgcgCGugcggGCGGGcucGCCc -3' miRNA: 3'- aCCGGCa-----GUCGUUCGa--GU-----UGCUU---UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 118364 | 0.66 | 0.978957 |
Target: 5'- gGGcCCGcCGGCGGGgUCucgcGCGAggaAGCCg -3' miRNA: 3'- aCC-GGCaGUCGUUCgAGu---UGCU---UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 92297 | 0.66 | 0.981211 |
Target: 5'- cGGCCcucgcgcgCGGCGGGgaCGGCGAGGgCg -3' miRNA: 3'- aCCGGca------GUCGUUCgaGUUGCUUUgG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 49507 | 0.66 | 0.98328 |
Target: 5'- cUGGCCcUCAucgcgcaccccGCAGGCcaggUCAACGGcGGCCu -3' miRNA: 3'- -ACCGGcAGU-----------CGUUCG----AGUUGCU-UUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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