miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 119025 0.66 0.981211
Target:  5'- -uGCCGaggCAGCGGGCcUgGGCGAAGgCg -3'
miRNA:   3'- acCGGCa--GUCGUUCG-AgUUGCUUUgG- -5'
23585 3' -51.6 NC_005261.1 + 118364 0.66 0.978957
Target:  5'- gGGcCCGcCGGCGGGgUCucgcGCGAggaAGCCg -3'
miRNA:   3'- aCC-GGCaGUCGUUCgAGu---UGCU---UUGG- -5'
23585 3' -51.6 NC_005261.1 + 7655 0.66 0.98328
Target:  5'- gGGCCGcgCGGCGGcGCUuccgccCGGCGGGccGCCc -3'
miRNA:   3'- aCCGGCa-GUCGUU-CGA------GUUGCUU--UGG- -5'
23585 3' -51.6 NC_005261.1 + 49507 0.66 0.98328
Target:  5'- cUGGCCcUCAucgcgcaccccGCAGGCcaggUCAACGGcGGCCu -3'
miRNA:   3'- -ACCGGcAGU-----------CGUUCG----AGUUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 53662 0.66 0.981211
Target:  5'- cGGCCGUCuacggGGCcguGCUCcaGGCGcuGGGCCc -3'
miRNA:   3'- aCCGGCAG-----UCGuu-CGAG--UUGC--UUUGG- -5'
23585 3' -51.6 NC_005261.1 + 74418 0.66 0.98328
Target:  5'- aGGCaGUCGGCGGcgucggguucacGCUC-ACGcAGCCg -3'
miRNA:   3'- aCCGgCAGUCGUU------------CGAGuUGCuUUGG- -5'
23585 3' -51.6 NC_005261.1 + 106023 0.66 0.982881
Target:  5'- cGGCCGgCAGCucgucgggcgccAGCUCcAGCGcgcGCCg -3'
miRNA:   3'- aCCGGCaGUCGu-----------UCGAG-UUGCuu-UGG- -5'
23585 3' -51.6 NC_005261.1 + 116966 0.66 0.978957
Target:  5'- aGGCCGUCcuCGuGCUCGuuGCGGcacgcccugaaaAGCCg -3'
miRNA:   3'- aCCGGCAGucGUuCGAGU--UGCU------------UUGG- -5'
23585 3' -51.6 NC_005261.1 + 136841 0.66 0.981211
Target:  5'- cGGCCG-CGGC--GCcCGGCGugGCCu -3'
miRNA:   3'- aCCGGCaGUCGuuCGaGUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 47027 0.66 0.98328
Target:  5'- gGGCC-UCGGCcAGCaCGgcgccgaagcgcGCGAAGCCc -3'
miRNA:   3'- aCCGGcAGUCGuUCGaGU------------UGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 26597 0.66 0.978957
Target:  5'- aGGCgG-CGGCGGGCggCGGCGGcacggcGCCg -3'
miRNA:   3'- aCCGgCaGUCGUUCGa-GUUGCUu-----UGG- -5'
23585 3' -51.6 NC_005261.1 + 4195 0.66 0.979882
Target:  5'- gUGGCCGgccauggCcGCGAGCgcggCGGCGGcguaguugaggguguAGCCg -3'
miRNA:   3'- -ACCGGCa------GuCGUUCGa---GUUGCU---------------UUGG- -5'
23585 3' -51.6 NC_005261.1 + 97161 0.66 0.98328
Target:  5'- gGGCUGgCGGCGgaccgcgccgccGGCUC--UGAGGCCg -3'
miRNA:   3'- aCCGGCaGUCGU------------UCGAGuuGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 92297 0.66 0.981211
Target:  5'- cGGCCcucgcgcgCGGCGGGgaCGGCGAGGgCg -3'
miRNA:   3'- aCCGGca------GUCGUUCgaGUUGCUUUgG- -5'
23585 3' -51.6 NC_005261.1 + 87720 0.66 0.981211
Target:  5'- cGGCCcugCuGCGcuGGCUgGGCGAGGCg -3'
miRNA:   3'- aCCGGca-GuCGU--UCGAgUUGCUUUGg -5'
23585 3' -51.6 NC_005261.1 + 126331 0.66 0.978957
Target:  5'- gGGCCGggcccgCGGCGGGCgcgCGugcggGCGGGcucGCCc -3'
miRNA:   3'- aCCGGCa-----GUCGUUCGa--GU-----UGCUU---UGG- -5'
23585 3' -51.6 NC_005261.1 + 20969 0.66 0.978957
Target:  5'- -cGCCGUCcucgaGGCGcgcGGCg-AACGAGACCc -3'
miRNA:   3'- acCGGCAG-----UCGU---UCGagUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 109078 0.66 0.981211
Target:  5'- uUGGCUGgaUCcGCGGGCgggucCGGCGggGCg -3'
miRNA:   3'- -ACCGGC--AGuCGUUCGa----GUUGCuuUGg -5'
23585 3' -51.6 NC_005261.1 + 106686 0.66 0.981211
Target:  5'- cGGCCcaggcgugcgaGUCGGC--GCUCAGCaGcAGCCg -3'
miRNA:   3'- aCCGG-----------CAGUCGuuCGAGUUG-CuUUGG- -5'
23585 3' -51.6 NC_005261.1 + 5830 0.66 0.978957
Target:  5'- gGGCCaggcGUCGGCGgcGGCcUCGGgGAAcagcGCCg -3'
miRNA:   3'- aCCGG----CAGUCGU--UCG-AGUUgCUU----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.