miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 103821 0.66 0.98673
Target:  5'- -cGCCGcCAGCAgcucgcggaggAGCUCGcccuugcGCGcGAGCCg -3'
miRNA:   3'- acCGGCaGUCGU-----------UCGAGU-------UGC-UUUGG- -5'
23585 3' -51.6 NC_005261.1 + 67314 0.66 0.986895
Target:  5'- -cGCCGUCGGCcgccgccgcGCUCAGCcgcaGGAACa -3'
miRNA:   3'- acCGGCAGUCGuu-------CGAGUUG----CUUUGg -5'
23585 3' -51.6 NC_005261.1 + 118133 0.66 0.986895
Target:  5'- cGcGCCGcUCGGCcGGCUC-GCGcAGACg -3'
miRNA:   3'- aC-CGGC-AGUCGuUCGAGuUGC-UUUGg -5'
23585 3' -51.6 NC_005261.1 + 124116 0.66 0.986895
Target:  5'- cGGCaccgcaGUCAGCAucacgcgcAGCUCGugccaguaaaucAgGGAGCCc -3'
miRNA:   3'- aCCGg-----CAGUCGU--------UCGAGU------------UgCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 118629 0.66 0.986895
Target:  5'- cUGGCCGccgCGGCGGcGCUCuggGCcccGGGCCg -3'
miRNA:   3'- -ACCGGCa--GUCGUU-CGAGu--UGc--UUUGG- -5'
23585 3' -51.6 NC_005261.1 + 98037 0.66 0.986895
Target:  5'- -cGCCG-CGGUAcuGGCggccgcgggCGGCGGGACCg -3'
miRNA:   3'- acCGGCaGUCGU--UCGa--------GUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 28851 0.66 0.986895
Target:  5'- cGGCCGUCguGGCcgccgcccuugAGGCUgCGgcGCGGAcGCCg -3'
miRNA:   3'- aCCGGCAG--UCG-----------UUCGA-GU--UGCUU-UGG- -5'
23585 3' -51.6 NC_005261.1 + 4506 0.66 0.986895
Target:  5'- gGGCCccaGUCGcgcgcccgcGCGGGCgccgCGGCGAGggcGCCg -3'
miRNA:   3'- aCCGG---CAGU---------CGUUCGa---GUUGCUU---UGG- -5'
23585 3' -51.6 NC_005261.1 + 9613 0.66 0.986895
Target:  5'- gGGCCcgggGUgGGCAGGCggggGugGggGCUg -3'
miRNA:   3'- aCCGG----CAgUCGUUCGag--UugCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 133161 0.66 0.985171
Target:  5'- -cGCCGUCGGCGucGC-CGcCGAcAACCg -3'
miRNA:   3'- acCGGCAGUCGUu-CGaGUuGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 110712 1.14 0.003318
Target:  5'- gUGGCCGUCAGCAAGCUCAACGAAACCa -3'
miRNA:   3'- -ACCGGCAGUCGUUCGAGUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 68424 0.66 0.986895
Target:  5'- cGGCgCGUCcuGCAccuGUUCGACGu-GCCc -3'
miRNA:   3'- aCCG-GCAGu-CGUu--CGAGUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 76246 0.66 0.986895
Target:  5'- cGGCgCcUgAGCcAGUUCAACGugGCCa -3'
miRNA:   3'- aCCG-GcAgUCGuUCGAGUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 66408 0.66 0.986895
Target:  5'- aGGCguCGUCGcGCAcgcggcgcuucAGCUC--CGAGACCa -3'
miRNA:   3'- aCCG--GCAGU-CGU-----------UCGAGuuGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 58022 0.66 0.986895
Target:  5'- aGuGCCG-CGGCGgcAGCUCcagggAGCGcgGCCg -3'
miRNA:   3'- aC-CGGCaGUCGU--UCGAG-----UUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 34582 0.66 0.986895
Target:  5'- cUGGCCGaguGC-GGCuUCGACGAcgacGGCCu -3'
miRNA:   3'- -ACCGGCaguCGuUCG-AGUUGCU----UUGG- -5'
23585 3' -51.6 NC_005261.1 + 109359 0.66 0.985171
Target:  5'- -cGCCGUcCAGCc-GCUCgAGCGcgGCCc -3'
miRNA:   3'- acCGGCA-GUCGuuCGAG-UUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 23528 0.66 0.985171
Target:  5'- cGGUCG--GGCGAGCggcagaggCGGCaGGAGCCg -3'
miRNA:   3'- aCCGGCagUCGUUCGa-------GUUG-CUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 5209 0.66 0.986895
Target:  5'- gGGCCGaggUCcGCGGaCUCGAUGAggUCg -3'
miRNA:   3'- aCCGGC---AGuCGUUcGAGUUGCUuuGG- -5'
23585 3' -51.6 NC_005261.1 + 93147 0.66 0.986895
Target:  5'- gGGuCCGUCuGC-AGCUCGcACGcgGCg -3'
miRNA:   3'- aCC-GGCAGuCGuUCGAGU-UGCuuUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.