miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 77834 0.66 0.987059
Target:  5'- gGGCCGgcccgcgccauggaGGCGcaccucGC-CAACGAGACCa -3'
miRNA:   3'- aCCGGCag------------UCGUu-----CGaGUUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 41032 0.66 0.986895
Target:  5'- gUGGCCG-CGGCGcuuccGGCcgCGGCccGGCCg -3'
miRNA:   3'- -ACCGGCaGUCGU-----UCGa-GUUGcuUUGG- -5'
23585 3' -51.6 NC_005261.1 + 76985 0.66 0.986895
Target:  5'- aGGCgGcCAGCGagucgAGCUCGcgcCGAAcGCCg -3'
miRNA:   3'- aCCGgCaGUCGU-----UCGAGUu--GCUU-UGG- -5'
23585 3' -51.6 NC_005261.1 + 42844 0.66 0.986895
Target:  5'- aUGGCCGcgagCGGCGcGC-CGG-GggGCCg -3'
miRNA:   3'- -ACCGGCa---GUCGUuCGaGUUgCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 99306 0.66 0.986895
Target:  5'- cGGCCGcCGGCuuGGCgc-GCG-GGCCg -3'
miRNA:   3'- aCCGGCaGUCGu-UCGaguUGCuUUGG- -5'
23585 3' -51.6 NC_005261.1 + 92755 0.66 0.986895
Target:  5'- aUGGCCGuguUCAGCAcGCgCGugGc-GCCc -3'
miRNA:   3'- -ACCGGC---AGUCGUuCGaGUugCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 40444 0.66 0.986895
Target:  5'- cGGuCCGcCGGCccgGGGCUCGGgaguCGAuGCCg -3'
miRNA:   3'- aCC-GGCaGUCG---UUCGAGUU----GCUuUGG- -5'
23585 3' -51.6 NC_005261.1 + 68984 0.66 0.986895
Target:  5'- cGGCgCGggcCAGCGc-CUCGGCGAAccGCCc -3'
miRNA:   3'- aCCG-GCa--GUCGUucGAGUUGCUU--UGG- -5'
23585 3' -51.6 NC_005261.1 + 84139 0.66 0.986895
Target:  5'- cGGCCaUCGGCAacguGGCggUCcGCGcgGCCu -3'
miRNA:   3'- aCCGGcAGUCGU----UCG--AGuUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 109023 0.66 0.986895
Target:  5'- gGGCCccaGUCGcgcgcccgcGCGGGCgccgCGGCGAGggcGCCg -3'
miRNA:   3'- aCCGG---CAGU---------CGUUCGa---GUUGCUU---UGG- -5'
23585 3' -51.6 NC_005261.1 + 133368 0.66 0.986895
Target:  5'- cGGCCGUCguGGCcgccgcccuugAGGCUgCGgcGCGGAcGCCg -3'
miRNA:   3'- aCCGGCAG--UCG-----------UUCGA-GU--UGCUU-UGG- -5'
23585 3' -51.6 NC_005261.1 + 92265 0.66 0.986895
Target:  5'- aGaGCUGgCGcGCAuGCUCAACGgcGCCc -3'
miRNA:   3'- aC-CGGCaGU-CGUuCGAGUUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 40344 0.66 0.986895
Target:  5'- cGGuCCGcCGGCccgGGGCUCGGaaauCGAuGCCg -3'
miRNA:   3'- aCC-GGCaGUCG---UUCGAGUU----GCUuUGG- -5'
23585 3' -51.6 NC_005261.1 + 118133 0.66 0.986895
Target:  5'- cGcGCCGcUCGGCcGGCUC-GCGcAGACg -3'
miRNA:   3'- aC-CGGC-AGUCGuUCGAGuUGC-UUUGg -5'
23585 3' -51.6 NC_005261.1 + 114130 0.66 0.986895
Target:  5'- gGGCCcgggGUgGGCAGGCggggGugGggGCUg -3'
miRNA:   3'- aCCGG----CAgUCGUUCGag--UugCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 19495 0.66 0.986895
Target:  5'- aGGUgcUCGGCGAGCgCGACGccguGCCc -3'
miRNA:   3'- aCCGgcAGUCGUUCGaGUUGCuu--UGG- -5'
23585 3' -51.6 NC_005261.1 + 67314 0.66 0.986895
Target:  5'- -cGCCGUCGGCcgccgccgcGCUCAGCcgcaGGAACa -3'
miRNA:   3'- acCGGCAGUCGuu-------CGAGUUG----CUUUGg -5'
23585 3' -51.6 NC_005261.1 + 27374 0.66 0.986895
Target:  5'- aGGCCGcgCGGCuguucgccaGGGCgggCAGCgGAAACUc -3'
miRNA:   3'- aCCGGCa-GUCG---------UUCGa--GUUG-CUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 53290 0.66 0.986895
Target:  5'- cGGCCGcCgAGgAGGUgcugcGCGAGGCCg -3'
miRNA:   3'- aCCGGCaG-UCgUUCGagu--UGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 109727 0.66 0.986895
Target:  5'- gGGCCGaggUCcGCGGaCUCGAUGAggUCg -3'
miRNA:   3'- aCCGGC---AGuCGUUcGAGUUGCUuuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.