miRNA display CGI


Results 21 - 40 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 5209 0.66 0.986895
Target:  5'- gGGCCGaggUCcGCGGaCUCGAUGAggUCg -3'
miRNA:   3'- aCCGGC---AGuCGUUcGAGUUGCUuuGG- -5'
23585 3' -51.6 NC_005261.1 + 19495 0.66 0.986895
Target:  5'- aGGUgcUCGGCGAGCgCGACGccguGCCc -3'
miRNA:   3'- aCCGgcAGUCGUUCGaGUUGCuu--UGG- -5'
23585 3' -51.6 NC_005261.1 + 40444 0.66 0.986895
Target:  5'- cGGuCCGcCGGCccgGGGCUCGGgaguCGAuGCCg -3'
miRNA:   3'- aCC-GGCaGUCG---UUCGAGUU----GCUuUGG- -5'
23585 3' -51.6 NC_005261.1 + 68984 0.66 0.986895
Target:  5'- cGGCgCGggcCAGCGc-CUCGGCGAAccGCCc -3'
miRNA:   3'- aCCG-GCa--GUCGUucGAGUUGCUU--UGG- -5'
23585 3' -51.6 NC_005261.1 + 114130 0.66 0.986895
Target:  5'- gGGCCcgggGUgGGCAGGCggggGugGggGCUg -3'
miRNA:   3'- aCCGG----CAgUCGUUCGag--UugCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 118629 0.66 0.986895
Target:  5'- cUGGCCGccgCGGCGGcGCUCuggGCcccGGGCCg -3'
miRNA:   3'- -ACCGGCa--GUCGUU-CGAGu--UGc--UUUGG- -5'
23585 3' -51.6 NC_005261.1 + 27374 0.66 0.986895
Target:  5'- aGGCCGcgCGGCuguucgccaGGGCgggCAGCgGAAACUc -3'
miRNA:   3'- aCCGGCa-GUCG---------UUCGa--GUUG-CUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 4506 0.66 0.986895
Target:  5'- gGGCCccaGUCGcgcgcccgcGCGGGCgccgCGGCGAGggcGCCg -3'
miRNA:   3'- aCCGG---CAGU---------CGUUCGa---GUUGCUU---UGG- -5'
23585 3' -51.6 NC_005261.1 + 28851 0.66 0.986895
Target:  5'- cGGCCGUCguGGCcgccgcccuugAGGCUgCGgcGCGGAcGCCg -3'
miRNA:   3'- aCCGGCAG--UCG-----------UUCGA-GU--UGCUU-UGG- -5'
23585 3' -51.6 NC_005261.1 + 99306 0.66 0.986895
Target:  5'- cGGCCGcCGGCuuGGCgc-GCG-GGCCg -3'
miRNA:   3'- aCCGGCaGUCGu-UCGaguUGCuUUGG- -5'
23585 3' -51.6 NC_005261.1 + 109727 0.66 0.986895
Target:  5'- gGGCCGaggUCcGCGGaCUCGAUGAggUCg -3'
miRNA:   3'- aCCGGC---AGuCGUUcGAGUUGCUuuGG- -5'
23585 3' -51.6 NC_005261.1 + 109023 0.66 0.986895
Target:  5'- gGGCCccaGUCGcgcgcccgcGCGGGCgccgCGGCGAGggcGCCg -3'
miRNA:   3'- aCCGG---CAGU---------CGUUCGa---GUUGCUU---UGG- -5'
23585 3' -51.6 NC_005261.1 + 40344 0.66 0.986895
Target:  5'- cGGuCCGcCGGCccgGGGCUCGGaaauCGAuGCCg -3'
miRNA:   3'- aCC-GGCaGUCG---UUCGAGUU----GCUuUGG- -5'
23585 3' -51.6 NC_005261.1 + 103821 0.66 0.98673
Target:  5'- -cGCCGcCAGCAgcucgcggaggAGCUCGcccuugcGCGcGAGCCg -3'
miRNA:   3'- acCGGCaGUCGU-----------UCGAGU-------UGC-UUUGG- -5'
23585 3' -51.6 NC_005261.1 + 101532 0.66 0.98673
Target:  5'- cGGCgGUCAGCGcggggGGC-CGAgGGAcuucagcACCg -3'
miRNA:   3'- aCCGgCAGUCGU-----UCGaGUUgCUU-------UGG- -5'
23585 3' -51.6 NC_005261.1 + 110829 0.66 0.986395
Target:  5'- gGGCCG-CGGaCGAGUUUccgcugcccgcccuGGCGAAcaGCCg -3'
miRNA:   3'- aCCGGCaGUC-GUUCGAG--------------UUGCUU--UGG- -5'
23585 3' -51.6 NC_005261.1 + 103506 0.66 0.985881
Target:  5'- cGGCCGcCAGgGggcgccgaccgcugaGGCUCGagguGCGAGggGCCc -3'
miRNA:   3'- aCCGGCaGUCgU---------------UCGAGU----UGCUU--UGG- -5'
23585 3' -51.6 NC_005261.1 + 86012 0.66 0.985881
Target:  5'- cGGCCG-CAGCGccgcgagguguacugAGCcgCcGCGggGCUc -3'
miRNA:   3'- aCCGGCaGUCGU---------------UCGa-GuUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 52442 0.66 0.985171
Target:  5'- cGGCCGUCuGCccAGCgaCGGCGuu-CCu -3'
miRNA:   3'- aCCGGCAGuCGu-UCGa-GUUGCuuuGG- -5'
23585 3' -51.6 NC_005261.1 + 20059 0.66 0.985171
Target:  5'- cGGCCcagaCGGCAAGCcccgCcGCGAcGGCCa -3'
miRNA:   3'- aCCGGca--GUCGUUCGa---GuUGCU-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.