Results 41 - 60 of 615 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23585 | 3' | -51.6 | NC_005261.1 | + | 32783 | 0.66 | 0.985171 |
Target: 5'- cGGCCGugUCcGCGcuguacGGCgcgAGCGAGACCu -3' miRNA: 3'- aCCGGC--AGuCGU------UCGag-UUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 20059 | 0.66 | 0.985171 |
Target: 5'- cGGCCcagaCGGCAAGCcccgCcGCGAcGGCCa -3' miRNA: 3'- aCCGGca--GUCGUUCGa---GuUGCU-UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 109359 | 0.66 | 0.985171 |
Target: 5'- -cGCCGUcCAGCc-GCUCgAGCGcgGCCc -3' miRNA: 3'- acCGGCA-GUCGuuCGAG-UUGCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 86282 | 0.66 | 0.985171 |
Target: 5'- cGGCguCGUCGGUGGcGCcggCGACGAgcggGACCa -3' miRNA: 3'- aCCG--GCAGUCGUU-CGa--GUUGCU----UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 133161 | 0.66 | 0.985171 |
Target: 5'- -cGCCGUCGGCGucGC-CGcCGAcAACCg -3' miRNA: 3'- acCGGCAGUCGUu-CGaGUuGCU-UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 55219 | 0.66 | 0.985171 |
Target: 5'- gGGgCGcCGGCGacggcGGCUCGgugcGCGAGGCg -3' miRNA: 3'- aCCgGCaGUCGU-----UCGAGU----UGCUUUGg -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 18478 | 0.66 | 0.985171 |
Target: 5'- gGGCCGcaaaCAGC-AGCaUgGGCGggGCg -3' miRNA: 3'- aCCGGCa---GUCGuUCG-AgUUGCuuUGg -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 69635 | 0.66 | 0.985171 |
Target: 5'- -cGCCGUCGGCcccGCUCccGCGGcccGCCu -3' miRNA: 3'- acCGGCAGUCGuu-CGAGu-UGCUu--UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 32486 | 0.66 | 0.985171 |
Target: 5'- aGGUCcccgCGcGCGAGUUCGugGAcGCCg -3' miRNA: 3'- aCCGGca--GU-CGUUCGAGUugCUuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 1237 | 0.66 | 0.985171 |
Target: 5'- cGGCCG-CAcgaucgaccuGcCAGGCgggGACGAGGCCg -3' miRNA: 3'- aCCGGCaGU----------C-GUUCGag-UUGCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 52442 | 0.66 | 0.985171 |
Target: 5'- cGGCCGUCuGCccAGCgaCGGCGuu-CCu -3' miRNA: 3'- aCCGGCAGuCGu-UCGa-GUUGCuuuGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 128045 | 0.66 | 0.985171 |
Target: 5'- cGGUCG--GGCGAGCggcagaggCGGCaGGAGCCg -3' miRNA: 3'- aCCGGCagUCGUUCGa-------GUUG-CUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 57286 | 0.66 | 0.985171 |
Target: 5'- aGGCCGaguaccugcgCAGCGGGCgCAAgGugguGGCCu -3' miRNA: 3'- aCCGGCa---------GUCGUUCGaGUUgCu---UUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 60521 | 0.66 | 0.985171 |
Target: 5'- uUGGCUGgggGGCGGcGgUCGAgGggGCCg -3' miRNA: 3'- -ACCGGCag-UCGUU-CgAGUUgCuuUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 15533 | 0.66 | 0.985171 |
Target: 5'- cGGCCGgCGGC--GCggCGAUGGAGCa -3' miRNA: 3'- aCCGGCaGUCGuuCGa-GUUGCUUUGg -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 28225 | 0.66 | 0.985171 |
Target: 5'- cGGCggCGcCGGCGGGCguguccaCGACGAccuGCCg -3' miRNA: 3'- aCCG--GCaGUCGUUCGa------GUUGCUu--UGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 30027 | 0.66 | 0.985171 |
Target: 5'- cGcGCCGUgcUGGCGcAGCUCucgcgccCGGAGCCg -3' miRNA: 3'- aC-CGGCA--GUCGU-UCGAGuu-----GCUUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 90559 | 0.66 | 0.985171 |
Target: 5'- cGGCCGUgCuGC--GCUCGGCGcuGCg -3' miRNA: 3'- aCCGGCA-GuCGuuCGAGUUGCuuUGg -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 1728 | 0.66 | 0.985171 |
Target: 5'- -cGCCGg-AGCAGGCgUCGGCGccGAGCUg -3' miRNA: 3'- acCGGCagUCGUUCG-AGUUGC--UUUGG- -5' |
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23585 | 3' | -51.6 | NC_005261.1 | + | 51222 | 0.66 | 0.985171 |
Target: 5'- gGGCCG-C-GCAcuuGGCcuUCGACGAgGGCCa -3' miRNA: 3'- aCCGGCaGuCGU---UCG--AGUUGCU-UUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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