miRNA display CGI


Results 41 - 60 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23585 3' -51.6 NC_005261.1 + 32783 0.66 0.985171
Target:  5'- cGGCCGugUCcGCGcuguacGGCgcgAGCGAGACCu -3'
miRNA:   3'- aCCGGC--AGuCGU------UCGag-UUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 20059 0.66 0.985171
Target:  5'- cGGCCcagaCGGCAAGCcccgCcGCGAcGGCCa -3'
miRNA:   3'- aCCGGca--GUCGUUCGa---GuUGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 109359 0.66 0.985171
Target:  5'- -cGCCGUcCAGCc-GCUCgAGCGcgGCCc -3'
miRNA:   3'- acCGGCA-GUCGuuCGAG-UUGCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 86282 0.66 0.985171
Target:  5'- cGGCguCGUCGGUGGcGCcggCGACGAgcggGACCa -3'
miRNA:   3'- aCCG--GCAGUCGUU-CGa--GUUGCU----UUGG- -5'
23585 3' -51.6 NC_005261.1 + 133161 0.66 0.985171
Target:  5'- -cGCCGUCGGCGucGC-CGcCGAcAACCg -3'
miRNA:   3'- acCGGCAGUCGUu-CGaGUuGCU-UUGG- -5'
23585 3' -51.6 NC_005261.1 + 55219 0.66 0.985171
Target:  5'- gGGgCGcCGGCGacggcGGCUCGgugcGCGAGGCg -3'
miRNA:   3'- aCCgGCaGUCGU-----UCGAGU----UGCUUUGg -5'
23585 3' -51.6 NC_005261.1 + 18478 0.66 0.985171
Target:  5'- gGGCCGcaaaCAGC-AGCaUgGGCGggGCg -3'
miRNA:   3'- aCCGGCa---GUCGuUCG-AgUUGCuuUGg -5'
23585 3' -51.6 NC_005261.1 + 69635 0.66 0.985171
Target:  5'- -cGCCGUCGGCcccGCUCccGCGGcccGCCu -3'
miRNA:   3'- acCGGCAGUCGuu-CGAGu-UGCUu--UGG- -5'
23585 3' -51.6 NC_005261.1 + 32486 0.66 0.985171
Target:  5'- aGGUCcccgCGcGCGAGUUCGugGAcGCCg -3'
miRNA:   3'- aCCGGca--GU-CGUUCGAGUugCUuUGG- -5'
23585 3' -51.6 NC_005261.1 + 1237 0.66 0.985171
Target:  5'- cGGCCG-CAcgaucgaccuGcCAGGCgggGACGAGGCCg -3'
miRNA:   3'- aCCGGCaGU----------C-GUUCGag-UUGCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 52442 0.66 0.985171
Target:  5'- cGGCCGUCuGCccAGCgaCGGCGuu-CCu -3'
miRNA:   3'- aCCGGCAGuCGu-UCGa-GUUGCuuuGG- -5'
23585 3' -51.6 NC_005261.1 + 128045 0.66 0.985171
Target:  5'- cGGUCG--GGCGAGCggcagaggCGGCaGGAGCCg -3'
miRNA:   3'- aCCGGCagUCGUUCGa-------GUUG-CUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 57286 0.66 0.985171
Target:  5'- aGGCCGaguaccugcgCAGCGGGCgCAAgGugguGGCCu -3'
miRNA:   3'- aCCGGCa---------GUCGUUCGaGUUgCu---UUGG- -5'
23585 3' -51.6 NC_005261.1 + 60521 0.66 0.985171
Target:  5'- uUGGCUGgggGGCGGcGgUCGAgGggGCCg -3'
miRNA:   3'- -ACCGGCag-UCGUU-CgAGUUgCuuUGG- -5'
23585 3' -51.6 NC_005261.1 + 15533 0.66 0.985171
Target:  5'- cGGCCGgCGGC--GCggCGAUGGAGCa -3'
miRNA:   3'- aCCGGCaGUCGuuCGa-GUUGCUUUGg -5'
23585 3' -51.6 NC_005261.1 + 28225 0.66 0.985171
Target:  5'- cGGCggCGcCGGCGGGCguguccaCGACGAccuGCCg -3'
miRNA:   3'- aCCG--GCaGUCGUUCGa------GUUGCUu--UGG- -5'
23585 3' -51.6 NC_005261.1 + 30027 0.66 0.985171
Target:  5'- cGcGCCGUgcUGGCGcAGCUCucgcgccCGGAGCCg -3'
miRNA:   3'- aC-CGGCA--GUCGU-UCGAGuu-----GCUUUGG- -5'
23585 3' -51.6 NC_005261.1 + 90559 0.66 0.985171
Target:  5'- cGGCCGUgCuGC--GCUCGGCGcuGCg -3'
miRNA:   3'- aCCGGCA-GuCGuuCGAGUUGCuuUGg -5'
23585 3' -51.6 NC_005261.1 + 1728 0.66 0.985171
Target:  5'- -cGCCGg-AGCAGGCgUCGGCGccGAGCUg -3'
miRNA:   3'- acCGGCagUCGUUCG-AGUUGC--UUUGG- -5'
23585 3' -51.6 NC_005261.1 + 51222 0.66 0.985171
Target:  5'- gGGCCG-C-GCAcuuGGCcuUCGACGAgGGCCa -3'
miRNA:   3'- aCCGGCaGuCGU---UCG--AGUUGCU-UUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.