miRNA display CGI


Results 61 - 80 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 29886 0.66 0.822748
Target:  5'- gCCgCCAG-CGCCcgGGCCCGcggcAGCGCGcGa -3'
miRNA:   3'- -GG-GGUCuGUGGa-UUGGGC----UCGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 73824 0.66 0.830963
Target:  5'- gCCC--GCGCCUAGCCCG-GCucuUGGGc -3'
miRNA:   3'- gGGGucUGUGGAUUGGGCuCGc--GCCC- -5'
23586 5' -58.5 NC_005261.1 + 4736 0.66 0.839008
Target:  5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3'
miRNA:   3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 107598 0.66 0.83015
Target:  5'- gUCCCgcaggacggcagcGGGCACagcgUCCGuGCGCGGGa -3'
miRNA:   3'- -GGGG-------------UCUGUGgauuGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 17154 0.66 0.822748
Target:  5'- aCgUAGAC-CgUcACCCGcGGCGCGGGc -3'
miRNA:   3'- gGgGUCUGuGgAuUGGGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 58777 0.66 0.822748
Target:  5'- cCCCCAGcGCGCC-GGCCagCGcGCGCaGGa -3'
miRNA:   3'- -GGGGUC-UGUGGaUUGG--GCuCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 5264 0.66 0.830963
Target:  5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3'
miRNA:   3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 116006 0.66 0.830963
Target:  5'- gCCCgAGGCgGCCUGAgCCGccgacGGCGCGc- -3'
miRNA:   3'- -GGGgUCUG-UGGAUUgGGC-----UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 136861 0.66 0.805832
Target:  5'- gCCUgGGACGCg-GACCaGGGCccGCGGGa -3'
miRNA:   3'- -GGGgUCUGUGgaUUGGgCUCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 5105 0.66 0.822748
Target:  5'- gCCaCAGcucCGCC-AGCUCG-GCGCGGGc -3'
miRNA:   3'- gGG-GUCu--GUGGaUUGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 3817 0.66 0.822748
Target:  5'- gCUCGcGCGCUgccgcgGGCCCGGGCGCuGGc -3'
miRNA:   3'- gGGGUcUGUGGa-----UUGGGCUCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 127695 0.66 0.834202
Target:  5'- gCCCCGGcgGCGCCggagGagcugcgcguggccuGCCUGGuaGCGGGa -3'
miRNA:   3'- -GGGGUC--UGUGGa---U---------------UGGGCUcgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 123209 0.66 0.809264
Target:  5'- gCCCCcGGCACCcgccgacAACuccuccucccgcgcuCCGGGCGCGGc -3'
miRNA:   3'- -GGGGuCUGUGGa------UUG---------------GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 66077 0.66 0.805832
Target:  5'- aUCCCGGACACCccgGacgugcagucgcACCCGGGgCucuuCGGGg -3'
miRNA:   3'- -GGGGUCUGUGGa--U------------UGGGCUC-Gc---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 60964 0.66 0.805832
Target:  5'- aUgCAGACGCCgc-CCgCGAGCGCGc- -3'
miRNA:   3'- gGgGUCUGUGGauuGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 53798 0.66 0.814368
Target:  5'- gCCCGGGgGCUggucGCCggaGGGCGCGGc -3'
miRNA:   3'- gGGGUCUgUGGau--UGGg--CUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 19565 0.66 0.822748
Target:  5'- gCCC-GcCGCCcucagcCCCGAGCGCGcGGc -3'
miRNA:   3'- gGGGuCuGUGGauu---GGGCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 77964 0.66 0.821917
Target:  5'- aCCCCGGGCGCCUcuucacggccgccGcuCCCGc-CGCGGcGg -3'
miRNA:   3'- -GGGGUCUGUGGA-------------Uu-GGGCucGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 17627 0.66 0.814368
Target:  5'- gCCCCAcGGCGCCgAGgCCGcaGGCGaCGGc -3'
miRNA:   3'- -GGGGU-CUGUGGaUUgGGC--UCGC-GCCc -5'
23586 5' -58.5 NC_005261.1 + 134403 0.66 0.822748
Target:  5'- gCCgCCAG-CGCCcgGGCCCGcggcAGCGCGcGa -3'
miRNA:   3'- -GG-GGUCuGUGGa-UUGGGC----UCGCGC-Cc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.