miRNA display CGI


Results 61 - 80 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 18689 0.72 0.469526
Target:  5'- gCCCCAGGCugUUGcggcgcacgucgGCgaagcagagaucgUCGGGCGCGGGg -3'
miRNA:   3'- -GGGGUCUGugGAU------------UG-------------GGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 19237 0.68 0.731905
Target:  5'- aCCCCgcgAGACugCgggGGCgCUGAacagcgcGCGCGGGu -3'
miRNA:   3'- -GGGG---UCUGugGa--UUG-GGCU-------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 19304 0.67 0.770277
Target:  5'- gCCgCGcGGCGCCgcGCCCGcGGCGCcGGa -3'
miRNA:   3'- -GGgGU-CUGUGGauUGGGC-UCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 19356 0.7 0.604858
Target:  5'- gCCCgCGGugGCCgagGCCaGGGCcGCGGGc -3'
miRNA:   3'- -GGG-GUCugUGGau-UGGgCUCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 19565 0.66 0.822748
Target:  5'- gCCC-GcCGCCcucagcCCCGAGCGCGcGGc -3'
miRNA:   3'- gGGGuCuGUGGauu---GGGCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 19733 0.67 0.797146
Target:  5'- gCCCCGaucuugaGCACCacgcgcuCCCGcgcgGGCGCGGGc -3'
miRNA:   3'- -GGGGUc------UGUGGauu----GGGC----UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 20008 0.69 0.674423
Target:  5'- gCCCCuGAC-CCgcACCCGucCGCGGu -3'
miRNA:   3'- -GGGGuCUGuGGauUGGGCucGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 20540 0.69 0.654595
Target:  5'- gCCUCAGGgccggccuCGCCgcgGGCCCGgccgGGCGCGGcGg -3'
miRNA:   3'- -GGGGUCU--------GUGGa--UUGGGC----UCGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 20926 0.69 0.644652
Target:  5'- gCCC--GCGCCggggcugGGCUCGAGgGCGGGc -3'
miRNA:   3'- gGGGucUGUGGa------UUGGGCUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 21358 0.69 0.684292
Target:  5'- gCCCCuGGCuugagcCCUGACCgCGccggaGGCGCGGu -3'
miRNA:   3'- -GGGGuCUGu-----GGAUUGG-GC-----UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 21599 0.7 0.59494
Target:  5'- uCCCC-GACGCCUuucAGCgCGAGCuuCGGGc -3'
miRNA:   3'- -GGGGuCUGUGGA---UUGgGCUCGc-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 22646 0.74 0.384295
Target:  5'- uCCCUAGACgcgcuggcggcGCCUGggcggcGCCCGAGUGCcgccGGGg -3'
miRNA:   3'- -GGGGUCUG-----------UGGAU------UGGGCUCGCG----CCC- -5'
23586 5' -58.5 NC_005261.1 + 22732 0.69 0.654595
Target:  5'- -aCCAG-CGCC--AgUCGGGCGCGGGg -3'
miRNA:   3'- ggGGUCuGUGGauUgGGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 23450 0.69 0.654595
Target:  5'- uCCUCAGggcagaagGCGCCaGGCCCGcggcggcgaguGCGCGGGc -3'
miRNA:   3'- -GGGGUC--------UGUGGaUUGGGCu----------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 23692 0.7 0.624744
Target:  5'- gCCCCcGACGCgaGGCCCGcccggucggguGGCaaGCGGGu -3'
miRNA:   3'- -GGGGuCUGUGgaUUGGGC-----------UCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 24094 0.74 0.384295
Target:  5'- cCCCCAccccCGCCUGcccaccccggGCCCGAG-GCGGGg -3'
miRNA:   3'- -GGGGUcu--GUGGAU----------UGGGCUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 24260 0.68 0.723277
Target:  5'- cCCCCucugcggggaGGGgGCUU-GCCCGGGUGgGGGu -3'
miRNA:   3'- -GGGG----------UCUgUGGAuUGGGCUCGCgCCC- -5'
23586 5' -58.5 NC_005261.1 + 24640 0.71 0.55559
Target:  5'- gCCCGGGCGCgaGgucGCCC-AGCGCGGcGg -3'
miRNA:   3'- gGGGUCUGUGgaU---UGGGcUCGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 25456 0.66 0.822748
Target:  5'- aUCCAGAC-CC-AGCCgGGGCuugaGUGGGa -3'
miRNA:   3'- gGGGUCUGuGGaUUGGgCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 26974 0.69 0.684292
Target:  5'- gCUCUcagcggcaGGugGCCUgGGCCCGGcCGCGGGg -3'
miRNA:   3'- -GGGG--------UCugUGGA-UUGGGCUcGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.