miRNA display CGI


Results 41 - 60 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 12973 0.75 0.337876
Target:  5'- aCCCCAGACagcgagggccgcgacGCCgauuaggcccgcgAGCCCGAGCGCGc- -3'
miRNA:   3'- -GGGGUCUG---------------UGGa------------UUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 13026 0.83 0.111963
Target:  5'- cCCCCAG-CACCacgAGCCaGGGCGCGGGg -3'
miRNA:   3'- -GGGGUCuGUGGa--UUGGgCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 13113 0.7 0.624744
Target:  5'- --aCAGACGCaccACCCGAGCGCGccccGGa -3'
miRNA:   3'- gggGUCUGUGgauUGGGCUCGCGC----CC- -5'
23586 5' -58.5 NC_005261.1 + 13776 0.67 0.797146
Target:  5'- gCCCCugaGGGCACCcGGCCCcggcuGGUGUGGcGg -3'
miRNA:   3'- -GGGG---UCUGUGGaUUGGGc----UCGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 13934 0.67 0.797146
Target:  5'- aCCCCGGuCGCgUugcGGCCCagccGCGCGGa -3'
miRNA:   3'- -GGGGUCuGUGgA---UUGGGcu--CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 14983 0.71 0.55559
Target:  5'- gCgCGGccGCGCCggccgcGCCCgGAGCGCGGGa -3'
miRNA:   3'- gGgGUC--UGUGGau----UGGG-CUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 15250 0.69 0.684292
Target:  5'- gCCCUgcaGGAgGCCaccgAGCCUGuGUGUGGGg -3'
miRNA:   3'- -GGGG---UCUgUGGa---UUGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 15270 0.74 0.36836
Target:  5'- gCCCCGGcgGCGCC--GCCgGGGCGCGcGGu -3'
miRNA:   3'- -GGGGUC--UGUGGauUGGgCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 15424 0.7 0.624744
Target:  5'- gCCCAGAguC---GgCCGGGCGCGGGc -3'
miRNA:   3'- gGGGUCUguGgauUgGGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 15670 0.68 0.723277
Target:  5'- gCUCCAGGaagaucaGCCUGcCCCGcAGCGCGa- -3'
miRNA:   3'- -GGGGUCUg------UGGAUuGGGC-UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 15819 0.66 0.822748
Target:  5'- aCCCagaagagcaaCAGGCACCgcAUCgCGAGCGCGc- -3'
miRNA:   3'- -GGG----------GUCUGUGGauUGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 15858 0.67 0.797146
Target:  5'- cCCCCAGGCcgcggugggGCC--GCgCGAGCcGCGGc -3'
miRNA:   3'- -GGGGUCUG---------UGGauUGgGCUCG-CGCCc -5'
23586 5' -58.5 NC_005261.1 + 15914 0.67 0.751768
Target:  5'- gCCCCGcGCAgCCggGGCCgGGGC-CGGGg -3'
miRNA:   3'- -GGGGUcUGU-GGa-UUGGgCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 15914 0.67 0.750831
Target:  5'- gCCaCCuGAcCGCC-GGCCCGGGCgucgccugcggcaGCGGGg -3'
miRNA:   3'- -GG-GGuCU-GUGGaUUGGGCUCG-------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 16147 0.68 0.731905
Target:  5'- aCCCC-GAUGCC-GACCgGcagggcaguagggGGCGCGGGc -3'
miRNA:   3'- -GGGGuCUGUGGaUUGGgC-------------UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 17042 0.71 0.565367
Target:  5'- gCCCCGGGCccggccccgGCCccguGCaCCGAGCGCccGGGc -3'
miRNA:   3'- -GGGGUCUG---------UGGau--UG-GGCUCGCG--CCC- -5'
23586 5' -58.5 NC_005261.1 + 17154 0.66 0.822748
Target:  5'- aCgUAGAC-CgUcACCCGcGGCGCGGGc -3'
miRNA:   3'- gGgGUCUGuGgAuUGGGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 17627 0.66 0.814368
Target:  5'- gCCCCAcGGCGCCgAGgCCGcaGGCGaCGGc -3'
miRNA:   3'- -GGGGU-CUGUGGaUUgGGC--UCGC-GCCc -5'
23586 5' -58.5 NC_005261.1 + 17836 0.69 0.634699
Target:  5'- gCgCAGACGCCgcucuGCUCGGuGCGCGaGGg -3'
miRNA:   3'- gGgGUCUGUGGau---UGGGCU-CGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 18689 0.71 0.545862
Target:  5'- gCCCCGcGGCgggGCCUuGCUCGGcCGCGGGg -3'
miRNA:   3'- -GGGGU-CUG---UGGAuUGGGCUcGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.