miRNA display CGI


Results 41 - 60 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 133478 0.76 0.316243
Target:  5'- -gCCAGGC-CCaAGCCCGAGC-CGGGg -3'
miRNA:   3'- ggGGUCUGuGGaUUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 136981 0.76 0.316243
Target:  5'- cCCCCGGGCACg-GACUCGGGCuuccCGGGg -3'
miRNA:   3'- -GGGGUCUGUGgaUUGGGCUCGc---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 133283 0.75 0.323336
Target:  5'- gCCggGGGCGCCUGGgCCGcGGCGCGGGc -3'
miRNA:   3'- -GGggUCUGUGGAUUgGGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 101310 0.75 0.330547
Target:  5'- gCCCCGGAguaCGuCCcgGGCCC-AGCGCGGGg -3'
miRNA:   3'- -GGGGUCU---GU-GGa-UUGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 106807 0.75 0.352885
Target:  5'- gCCgCCAG-CGCCUc-CCCGGGCaGCGGGu -3'
miRNA:   3'- -GG-GGUCuGUGGAuuGGGCUCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 107870 0.75 0.360565
Target:  5'- gCCCGGcGCGCCggccuucagGGCCgCGAGCGCGGc -3'
miRNA:   3'- gGGGUC-UGUGGa--------UUGG-GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 10645 0.74 0.36836
Target:  5'- gCCCCgaAGACGCCcagggcGCCCuGGUGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUGGau----UGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 53681 0.74 0.37627
Target:  5'- gCUCCAGGCGCUgGGCCCGcGUGUGGa -3'
miRNA:   3'- -GGGGUCUGUGGaUUGGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 89379 0.74 0.37627
Target:  5'- gCCCGGGCGCUgGGCCUGcuGCGCGGcGg -3'
miRNA:   3'- gGGGUCUGUGGaUUGGGCu-CGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 121958 0.74 0.381875
Target:  5'- cCCCCGGGCgaGCCgaaGCCCGgccccggcggccccGGCGCGGa -3'
miRNA:   3'- -GGGGUCUG--UGGau-UGGGC--------------UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 104419 0.74 0.384295
Target:  5'- cCCCCGGcCGCCcaaagacaAGCCCGccgcccGCGCGGGg -3'
miRNA:   3'- -GGGGUCuGUGGa-------UUGGGCu-----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127163 0.74 0.384295
Target:  5'- uCCCUAGACgcgcuggcggcGCCUGggcggcGCCCGAGUGCcgccGGGg -3'
miRNA:   3'- -GGGGUCUG-----------UGGAU------UGGGCUCGCG----CCC- -5'
23586 5' -58.5 NC_005261.1 + 128612 0.74 0.384295
Target:  5'- cCCCCAccccCGCCUGcccaccccggGCCCGAG-GCGGGg -3'
miRNA:   3'- -GGGGUcu--GUGGAU----------UGGGCUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 42487 0.74 0.389163
Target:  5'- cCCCCGGcggcggcggcgGCGCCgcugagcgcggcgGGCCCGAGCGCGa- -3'
miRNA:   3'- -GGGGUC-----------UGUGGa------------UUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 75208 0.74 0.392431
Target:  5'- gCCgCGGGCGCCggcGCCCGcgcgGGCGCGGc -3'
miRNA:   3'- -GGgGUCUGUGGau-UGGGC----UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 60062 0.74 0.392431
Target:  5'- gCCCCGGGCuCCUcagguGGCCCGccggcAGCgGCGGGc -3'
miRNA:   3'- -GGGGUCUGuGGA-----UUGGGC-----UCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 125661 0.74 0.392431
Target:  5'- gCCCCucucGGCcCCgcguuGCCCG-GCGCGGGg -3'
miRNA:   3'- -GGGGu---CUGuGGau---UGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 51736 0.74 0.395717
Target:  5'- gCCCCugccgcagacAGGCGCC-GGCCCGgccgcguccaucaacGGCGCGGGc -3'
miRNA:   3'- -GGGG----------UCUGUGGaUUGGGC---------------UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 60131 0.74 0.400679
Target:  5'- gCCgGGGCcgggGCCUGGgCCG-GCGCGGGg -3'
miRNA:   3'- gGGgUCUG----UGGAUUgGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 93929 0.73 0.417502
Target:  5'- gCCCgCGGGCAgcggcCCUGGCCCGccgcuGGCgGCGGGc -3'
miRNA:   3'- -GGG-GUCUGU-----GGAUUGGGC-----UCG-CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.