miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 4988 0.66 0.822748
Target:  5'- gCCCggaGGGCGCCgaggccCCCGGGCccccCGGGu -3'
miRNA:   3'- -GGGg--UCUGUGGauu---GGGCUCGc---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 5105 0.66 0.822748
Target:  5'- gCCaCAGcucCGCC-AGCUCG-GCGCGGGc -3'
miRNA:   3'- gGG-GUCu--GUGGaUUGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 5264 0.66 0.830963
Target:  5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3'
miRNA:   3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 5627 0.66 0.830963
Target:  5'- cCCCCuGGCGgCUcgccGGgCCGGGCguccGCGGGc -3'
miRNA:   3'- -GGGGuCUGUgGA----UUgGGCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 6241 0.67 0.761076
Target:  5'- gCCCGGGgaggGCCU-GCCCGcccCGCGGGg -3'
miRNA:   3'- gGGGUCUg---UGGAuUGGGCuc-GCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 6259 0.68 0.745191
Target:  5'- gCCUGGugGCCgcgcggcagcuccACCCGguagacgGGCGCGGGc -3'
miRNA:   3'- gGGGUCugUGGau-----------UGGGC-------UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 7887 0.7 0.585048
Target:  5'- aCCCgCAG-CGCgUc-CCCGAGCGCGGc -3'
miRNA:   3'- -GGG-GUCuGUGgAuuGGGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 8417 0.71 0.517032
Target:  5'- aUCCGGGCGCagggcgcgGGCgCGAGCGCGGa -3'
miRNA:   3'- gGGGUCUGUGga------UUGgGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 8543 0.69 0.664521
Target:  5'- gCCCCGG-C-CCcGGCCCGAGuCGCGa- -3'
miRNA:   3'- -GGGGUCuGuGGaUUGGGCUC-GCGCcc -5'
23586 5' -58.5 NC_005261.1 + 8853 0.68 0.742359
Target:  5'- gCCCGGugGacccgaagCCgcgcGACCCGcGCGCGGa -3'
miRNA:   3'- gGGGUCugU--------GGa---UUGGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 8929 0.7 0.585048
Target:  5'- gCgCAGGCGCggGGCgCCGGGgGCGGGc -3'
miRNA:   3'- gGgGUCUGUGgaUUG-GGCUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 9597 0.7 0.575188
Target:  5'- cCCCCAccccCGCCUcgGGCCCGGG-GUGGGc -3'
miRNA:   3'- -GGGGUcu--GUGGA--UUGGGCUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 9979 0.73 0.443525
Target:  5'- cCCCCGGACGC---GCCUcGGCGCGGc -3'
miRNA:   3'- -GGGGUCUGUGgauUGGGcUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 10213 0.67 0.797146
Target:  5'- cUCCCAGggcccGCGCCU-GCCC-AG-GCGGGc -3'
miRNA:   3'- -GGGGUC-----UGUGGAuUGGGcUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 10335 0.71 0.565367
Target:  5'- gCCCAGGC-CCgGGCCCGAcggGCGCcGGc -3'
miRNA:   3'- gGGGUCUGuGGaUUGGGCU---CGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 10396 0.66 0.805832
Target:  5'- gCCCCGuccGCugCUcgcGGCCgCGAGCGCGa- -3'
miRNA:   3'- -GGGGUc--UGugGA---UUGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 10645 0.74 0.36836
Target:  5'- gCCCCgaAGACGCCcagggcGCCCuGGUGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUGGau----UGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 10958 0.68 0.691177
Target:  5'- cCCCCAGACGCgUGGgccgcCCCGccccgcgcccgacuGGCGCuGGu -3'
miRNA:   3'- -GGGGUCUGUGgAUU-----GGGC--------------UCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 11063 0.69 0.631712
Target:  5'- gCCCAGGCGCCgccAGCgCGucuagggacgggacGGgGCGGGa -3'
miRNA:   3'- gGGGUCUGUGGa--UUGgGC--------------UCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 12697 0.72 0.498154
Target:  5'- -aCCAGAC-CUUGaaGCCCGAGCGgcuCGGGc -3'
miRNA:   3'- ggGGUCUGuGGAU--UGGGCUCGC---GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.