miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 102456 0.66 0.80497
Target:  5'- gCCCgCGGGCcuCCUGucucgGCCCGAGCcgccuucGCGGc -3'
miRNA:   3'- -GGG-GUCUGu-GGAU-----UGGGCUCG-------CGCCc -5'
23586 5' -58.5 NC_005261.1 + 107508 0.66 0.830963
Target:  5'- gCUCGGGC-CUggcGGCCCG-GCGcCGGGg -3'
miRNA:   3'- gGGGUCUGuGGa--UUGGGCuCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 44771 0.66 0.830963
Target:  5'- gCCCCGG-CACCgcGCUgGGGC-CGGu -3'
miRNA:   3'- -GGGGUCuGUGGauUGGgCUCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 65068 0.66 0.827697
Target:  5'- cCCCCGGccgagcaacaACGCCgccuggcggcgcgAGCCCGGcccggggaccGCGCGGa -3'
miRNA:   3'- -GGGGUC----------UGUGGa------------UUGGGCU----------CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 134403 0.66 0.822748
Target:  5'- gCCgCCAG-CGCCcgGGCCCGcggcAGCGCGcGa -3'
miRNA:   3'- -GG-GGUCuGUGGa-UUGGGC----UCGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 129973 0.66 0.822748
Target:  5'- aUCCAGAC-CC-AGCCgGGGCuugaGUGGGa -3'
miRNA:   3'- gGGGUCUGuGGaUUGGgCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 39537 0.66 0.817739
Target:  5'- gCCCCAGcuccggccGCGCCUccGGCCCcGGCGgagcccgcccucgccUGGGg -3'
miRNA:   3'- -GGGGUC--------UGUGGA--UUGGGcUCGC---------------GCCC- -5'
23586 5' -58.5 NC_005261.1 + 41074 0.66 0.822748
Target:  5'- aCCCAGccggccgggccgGCGCC-AGCgccuCCGAGCGUGGc -3'
miRNA:   3'- gGGGUC------------UGUGGaUUG----GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 117988 0.66 0.83015
Target:  5'- gCCCauggagcgcgcggCGGAgCGgCUGGCCaggcagCGGGCGCGGGg -3'
miRNA:   3'- -GGG-------------GUCU-GUgGAUUGG------GCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 52243 0.66 0.830963
Target:  5'- gCCCCGucggcGGCGCa--GCUCGAGCGCGc- -3'
miRNA:   3'- -GGGGU-----CUGUGgauUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 109781 0.66 0.830963
Target:  5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3'
miRNA:   3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 123209 0.66 0.809264
Target:  5'- gCCCCcGGCACCcgccgacAACuccuccucccgcgcuCCGGGCGCGGc -3'
miRNA:   3'- -GGGGuCUGUGGa------UUG---------------GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 136861 0.66 0.805832
Target:  5'- gCCUgGGACGCg-GACCaGGGCccGCGGGa -3'
miRNA:   3'- -GGGgUCUGUGgaUUGGgCUCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 66077 0.66 0.805832
Target:  5'- aUCCCGGACACCccgGacgugcagucgcACCCGGGgCucuuCGGGg -3'
miRNA:   3'- -GGGGUCUGUGGa--U------------UGGGCUC-Gc---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 134757 0.66 0.805832
Target:  5'- gCCCCGcuGGCGCgguACUCGAcGCGCGGc -3'
miRNA:   3'- -GGGGU--CUGUGgauUGGGCU-CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 109623 0.66 0.822748
Target:  5'- gCCaCAGcucCGCC-AGCUCG-GCGCGGGc -3'
miRNA:   3'- gGG-GUCu--GUGGaUUGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 112473 0.66 0.822748
Target:  5'- uCCCCAGGgugggcaaAUCgauCgCCGAGCGCGGc -3'
miRNA:   3'- -GGGGUCUg-------UGGauuG-GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 102287 0.66 0.822748
Target:  5'- -gCCGGGCucggGCCUGggcGCCCGcugggcugcGGCGCuGGGg -3'
miRNA:   3'- ggGGUCUG----UGGAU---UGGGC---------UCGCG-CCC- -5'
23586 5' -58.5 NC_005261.1 + 60964 0.66 0.805832
Target:  5'- aUgCAGACGCCgc-CCgCGAGCGCGc- -3'
miRNA:   3'- gGgGUCUGUGGauuGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 134805 0.66 0.830963
Target:  5'- gCCUGGACG-CUGGCCCGcGCGCu-- -3'
miRNA:   3'- gGGGUCUGUgGAUUGGGCuCGCGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.