miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 66616 0.76 0.302411
Target:  5'- gCCCGGGC-CCgcGCCCGGGcCGCGGcGg -3'
miRNA:   3'- gGGGUCUGuGGauUGGGCUC-GCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 134312 0.76 0.302411
Target:  5'- aCCCGGAgGCCggcGCCgGcGGCGCGGGc -3'
miRNA:   3'- gGGGUCUgUGGau-UGGgC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 105095 0.76 0.302411
Target:  5'- gCCCCGGACcuuccgcggggGCUUGcccGCgCGGGCGCGGGc -3'
miRNA:   3'- -GGGGUCUG-----------UGGAU---UGgGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 29795 0.76 0.302411
Target:  5'- aCCCGGAgGCCggcGCCgGcGGCGCGGGc -3'
miRNA:   3'- gGGGUCUgUGGau-UGGgC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 121385 0.76 0.31554
Target:  5'- gCCCCGcggcggcGGCGCCU-GCCCGAGUGCGa- -3'
miRNA:   3'- -GGGGU-------CUGUGGAuUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 28960 0.76 0.316243
Target:  5'- -gCCAGGC-CCaAGCCCGAGC-CGGGg -3'
miRNA:   3'- ggGGUCUGuGGaUUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 133478 0.76 0.316243
Target:  5'- -gCCAGGC-CCaAGCCCGAGC-CGGGg -3'
miRNA:   3'- ggGGUCUGuGGaUUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 32464 0.76 0.316243
Target:  5'- cCCCCGGGCACg-GACUCGGGCuuccCGGGg -3'
miRNA:   3'- -GGGGUCUGUGgaUUGGGCUCGc---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 136981 0.76 0.316243
Target:  5'- cCCCCGGGCACg-GACUCGGGCuuccCGGGg -3'
miRNA:   3'- -GGGGUCUGUGgaUUGGGCUCGc---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 28766 0.75 0.323336
Target:  5'- gCCggGGGCGCCUGGgCCGcGGCGCGGGc -3'
miRNA:   3'- -GGggUCUGUGGAUUgGGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 133283 0.75 0.323336
Target:  5'- gCCggGGGCGCCUGGgCCGcGGCGCGGGc -3'
miRNA:   3'- -GGggUCUGUGGAUUgGGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 101310 0.75 0.330547
Target:  5'- gCCCCGGAguaCGuCCcgGGCCC-AGCGCGGGg -3'
miRNA:   3'- -GGGGUCU---GU-GGa-UUGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 56227 0.75 0.331274
Target:  5'- cCCCCAaGCGCCaccagacggucguCCCGGGCGUGGGc -3'
miRNA:   3'- -GGGGUcUGUGGauu----------GGGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 12973 0.75 0.337876
Target:  5'- aCCCCAGACagcgagggccgcgacGCCgauuaggcccgcgAGCCCGAGCGCGc- -3'
miRNA:   3'- -GGGGUCUG---------------UGGa------------UUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 2290 0.75 0.352885
Target:  5'- gCCgCCAG-CGCCUc-CCCGGGCaGCGGGu -3'
miRNA:   3'- -GG-GGUCuGUGGAuuGGGCUCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 106807 0.75 0.352885
Target:  5'- gCCgCCAG-CGCCUc-CCCGGGCaGCGGGu -3'
miRNA:   3'- -GG-GGUCuGUGGAuuGGGCUCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 107870 0.75 0.360565
Target:  5'- gCCCGGcGCGCCggccuucagGGCCgCGAGCGCGGc -3'
miRNA:   3'- gGGGUC-UGUGGa--------UUGG-GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 3353 0.75 0.360565
Target:  5'- gCCCGGcGCGCCggccuucagGGCCgCGAGCGCGGc -3'
miRNA:   3'- gGGGUC-UGUGGa--------UUGG-GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 15270 0.74 0.36836
Target:  5'- gCCCCGGcgGCGCC--GCCgGGGCGCGcGGu -3'
miRNA:   3'- -GGGGUC--UGUGGauUGGgCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 10645 0.74 0.36836
Target:  5'- gCCCCgaAGACGCCcagggcGCCCuGGUGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUGGau----UGGGcUCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.