miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 73824 0.66 0.830963
Target:  5'- gCCC--GCGCCUAGCCCG-GCucuUGGGc -3'
miRNA:   3'- gGGGucUGUGGAUUGGGCuCGc--GCCC- -5'
23586 5' -58.5 NC_005261.1 + 116006 0.66 0.830963
Target:  5'- gCCCgAGGCgGCCUGAgCCGccgacGGCGCGc- -3'
miRNA:   3'- -GGGgUCUG-UGGAUUgGGC-----UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 30288 0.66 0.830963
Target:  5'- gCCUGGACG-CUGGCCCGcGCGCu-- -3'
miRNA:   3'- gGGGUCUGUgGAUUGGGCuCGCGccc -5'
23586 5' -58.5 NC_005261.1 + 5264 0.66 0.830963
Target:  5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3'
miRNA:   3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 44771 0.66 0.830963
Target:  5'- gCCCCGG-CACCgcGCUgGGGC-CGGu -3'
miRNA:   3'- -GGGGUCuGUGGauUGGgCUCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 44557 0.66 0.830963
Target:  5'- gCCCCGccGGCGCCgccGCCCGcGGaccgGUGGGc -3'
miRNA:   3'- -GGGGU--CUGUGGau-UGGGC-UCg---CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 134805 0.66 0.830963
Target:  5'- gCCUGGACG-CUGGCCCGcGCGCu-- -3'
miRNA:   3'- gGGGUCUGUgGAUUGGGCuCGCGccc -5'
23586 5' -58.5 NC_005261.1 + 109781 0.66 0.830963
Target:  5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3'
miRNA:   3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 5627 0.66 0.830963
Target:  5'- cCCCCuGGCGgCUcgccGGgCCGGGCguccGCGGGc -3'
miRNA:   3'- -GGGGuCUGUgGA----UUgGGCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 107508 0.66 0.830963
Target:  5'- gCUCGGGC-CUggcGGCCCG-GCGcCGGGg -3'
miRNA:   3'- gGGGUCUGuGGa--UUGGGCuCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 52243 0.66 0.830963
Target:  5'- gCCCCGucggcGGCGCa--GCUCGAGCGCGc- -3'
miRNA:   3'- -GGGGU-----CUGUGgauUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 107598 0.66 0.83015
Target:  5'- gUCCCgcaggacggcagcGGGCACagcgUCCGuGCGCGGGa -3'
miRNA:   3'- -GGGG-------------UCUGUGgauuGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 117988 0.66 0.83015
Target:  5'- gCCCauggagcgcgcggCGGAgCGgCUGGCCaggcagCGGGCGCGGGg -3'
miRNA:   3'- -GGG-------------GUCU-GUgGAUUGG------GCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 65068 0.66 0.827697
Target:  5'- cCCCCGGccgagcaacaACGCCgccuggcggcgcgAGCCCGGcccggggaccGCGCGGa -3'
miRNA:   3'- -GGGGUC----------UGUGGa------------UUGGGCU----------CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 135967 0.66 0.826054
Target:  5'- gCCCGGcgaggacgaGCGCCggcGGCCUGAGUggccgccggugcgcgGCGGGc -3'
miRNA:   3'- gGGGUC---------UGUGGa--UUGGGCUCG---------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 31450 0.66 0.826054
Target:  5'- gCCCGGcgaggacgaGCGCCggcGGCCUGAGUggccgccggugcgcgGCGGGc -3'
miRNA:   3'- gGGGUC---------UGUGGa--UUGGGCUCG---------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 112473 0.66 0.822748
Target:  5'- uCCCCAGGgugggcaaAUCgauCgCCGAGCGCGGc -3'
miRNA:   3'- -GGGGUCUg-------UGGauuG-GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 129973 0.66 0.822748
Target:  5'- aUCCAGAC-CC-AGCCgGGGCuugaGUGGGa -3'
miRNA:   3'- gGGGUCUGuGGaUUGGgCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 85255 0.66 0.822748
Target:  5'- cCCCCGccugccGGCGCCgca-CCG-GCGCGGc -3'
miRNA:   3'- -GGGGU------CUGUGGauugGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 19565 0.66 0.822748
Target:  5'- gCCC-GcCGCCcucagcCCCGAGCGCGcGGc -3'
miRNA:   3'- gGGGuCuGUGGauu---GGGCUCGCGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.