miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 138194 0.72 0.498154
Target:  5'- cCCCCAaaaaACACCcc-CCCGGggucGCGCGGGg -3'
miRNA:   3'- -GGGGUc---UGUGGauuGGGCU----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 138102 0.7 0.611812
Target:  5'- gCCCCGcgagcaccaggggcGGCGCC-GGCgCGGGCGgCGGGg -3'
miRNA:   3'- -GGGGU--------------CUGUGGaUUGgGCUCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 137980 0.68 0.69412
Target:  5'- gCCgCAGcCGCCgccgcagccgGGCCCGcuCGCGGGg -3'
miRNA:   3'- -GGgGUCuGUGGa---------UUGGGCucGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 137785 0.67 0.78832
Target:  5'- cCCCCGGGCcCCgccGCCCGcGC-CGGc -3'
miRNA:   3'- -GGGGUCUGuGGau-UGGGCuCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 137675 0.66 0.839008
Target:  5'- aCCCCGGGgcccccCACCgcccCUCGuGCaGCGGGc -3'
miRNA:   3'- -GGGGUCU------GUGGauu-GGGCuCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 137052 0.7 0.604858
Target:  5'- gCCCCGG-C-CCcGGCCgCG-GCGCGGGc -3'
miRNA:   3'- -GGGGUCuGuGGaUUGG-GCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 136981 0.76 0.316243
Target:  5'- cCCCCGGGCACg-GACUCGGGCuuccCGGGg -3'
miRNA:   3'- -GGGGUCUGUGgaUUGGGCUCGc---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 136861 0.66 0.805832
Target:  5'- gCCUgGGACGCg-GACCaGGGCccGCGGGa -3'
miRNA:   3'- -GGGgUCUGUGgaUUGGgCUCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 135967 0.66 0.826054
Target:  5'- gCCCGGcgaggacgaGCGCCggcGGCCUGAGUggccgccggugcgcgGCGGGc -3'
miRNA:   3'- gGGGUC---------UGUGGa--UUGGGCUCG---------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 135792 0.73 0.433005
Target:  5'- aCCCCgAGGCGCUggccgagaucgcGGCCCGccgccGCGCGGGg -3'
miRNA:   3'- -GGGG-UCUGUGGa-----------UUGGGCu----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 135634 0.68 0.713621
Target:  5'- gCCCUucaugcGCugCUAccuGCgCGGGCGCGGGc -3'
miRNA:   3'- -GGGGuc----UGugGAU---UGgGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 135441 0.69 0.664521
Target:  5'- cUCCCGGcCGCCggcggcAGCCCcucGGGgGCGGGc -3'
miRNA:   3'- -GGGGUCuGUGGa-----UUGGG---CUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 135396 0.69 0.634699
Target:  5'- gCCgCCGG-C-CCUGccGCCCGAGCuCGGGc -3'
miRNA:   3'- -GG-GGUCuGuGGAU--UGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 135274 0.71 0.53619
Target:  5'- gCCCGGGC-CCUAGUCCGGGC-CGGa -3'
miRNA:   3'- gGGGUCUGuGGAUUGGGCUCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 134886 0.7 0.585048
Target:  5'- -gCCGGcGCGCCgGGCgCCGcGGCGCGGGu -3'
miRNA:   3'- ggGGUC-UGUGGaUUG-GGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 134805 0.66 0.830963
Target:  5'- gCCUGGACG-CUGGCCCGcGCGCu-- -3'
miRNA:   3'- gGGGUCUGUgGAUUGGGCuCGCGccc -5'
23586 5' -58.5 NC_005261.1 + 134757 0.66 0.805832
Target:  5'- gCCCCGcuGGCGCgguACUCGAcGCGCGGc -3'
miRNA:   3'- -GGGGU--CUGUGgauUGGGCU-CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 134719 0.69 0.654595
Target:  5'- gCCCAGACccgGCCggGACCCGgacucGGCGaCGGc -3'
miRNA:   3'- gGGGUCUG---UGGa-UUGGGC-----UCGC-GCCc -5'
23586 5' -58.5 NC_005261.1 + 134649 0.7 0.585048
Target:  5'- gCCCAGAC-CCgc-CCCGAGcCGCGa- -3'
miRNA:   3'- gGGGUCUGuGGauuGGGCUC-GCGCcc -5'
23586 5' -58.5 NC_005261.1 + 134622 0.7 0.614795
Target:  5'- gCUCCGGGCAgCUGAgCUGcuuGGCGCGGc -3'
miRNA:   3'- -GGGGUCUGUgGAUUgGGC---UCGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.