miRNA display CGI


Results 21 - 40 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 123686 0.66 0.70567
Target:  5'- aCGUCcCGGCGcucaGCGUGGgCCgcguacuCGGCCa -3'
miRNA:   3'- -GCAGaGCCGC----CGCAUCgGGac-----GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 7186 0.66 0.70567
Target:  5'- gGUCguaggUGGCGGCGUcGCCg-GCgcgcucGGCCu -3'
miRNA:   3'- gCAGa----GCCGCCGCAuCGGgaCG------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 53281 0.66 0.656434
Target:  5'- aCGcCUCGGCGGCcgccgaggaGGUgCUGCgcgaGGCCg -3'
miRNA:   3'- -GCaGAGCCGCCGca-------UCGgGACG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 92933 0.66 0.686094
Target:  5'- gGUCUCGG-GGCGguacaaGGCCagccgguacgGCAGCa -3'
miRNA:   3'- gCAGAGCCgCCGCa-----UCGGga--------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 104769 0.66 0.676239
Target:  5'- cCGgCUgCGGCGGCGgcugcggGGCggCUGCGGCg -3'
miRNA:   3'- -GCaGA-GCCGCCGCa------UCGg-GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 101278 0.66 0.70567
Target:  5'- gCG-C-CGcGCGGCG-GGCCUUGC-GCCa -3'
miRNA:   3'- -GCaGaGC-CGCCGCaUCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 18336 0.66 0.70567
Target:  5'- gCGUCgCGGCgccaGGUGUAcacGCCCU-CGGCUg -3'
miRNA:   3'- -GCAGaGCCG----CCGCAU---CGGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 93363 0.66 0.695907
Target:  5'- gCGgcgCUC-GCGGCGgcGCUCUuccucGCGGCUg -3'
miRNA:   3'- -GCa--GAGcCGCCGCauCGGGA-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 11229 0.66 0.676239
Target:  5'- cCGcCUgCGGCGGgGUcGGcCCCUGaCGGUCc -3'
miRNA:   3'- -GCaGA-GCCGCCgCA-UC-GGGAC-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 18682 0.66 0.694928
Target:  5'- --aCUUGcggccccGCGGCGgGGCCUUGCucGGCCg -3'
miRNA:   3'- gcaGAGC-------CGCCGCaUCGGGACG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 125665 0.66 0.656434
Target:  5'- -cUCUCGGCcccGCGUuGCCCgGCgcggGGCCc -3'
miRNA:   3'- gcAGAGCCGc--CGCAuCGGGaCG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 102470 0.66 0.670308
Target:  5'- uGUCUCGGCccgagccgccuucgcGGCuGgcuucGGCCCagGUGGCCu -3'
miRNA:   3'- gCAGAGCCG---------------CCG-Ca----UCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 49374 0.66 0.656434
Target:  5'- uGUCcCGcGaGGCGcGGCCCagGUAGCCg -3'
miRNA:   3'- gCAGaGC-CgCCGCaUCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 109097 0.66 0.676239
Target:  5'- gGUC-CGGCGG-GgcGCCCcccgGC-GCCa -3'
miRNA:   3'- gCAGaGCCGCCgCauCGGGa---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 122163 0.66 0.686094
Target:  5'- uCGUCUacacgcgcCGGCucGGCGcgGGCCC-GCuGCCc -3'
miRNA:   3'- -GCAGA--------GCCG--CCGCa-UCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 99486 0.66 0.695907
Target:  5'- gGUC-CGGCucuGGCGcgggcccgGGCUCUGCGGgCg -3'
miRNA:   3'- gCAGaGCCG---CCGCa-------UCGGGACGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 92168 0.66 0.706643
Target:  5'- gCG-CUCGGUGGagccgccgGGCCCgacgccgccgcuggcGCAGCCg -3'
miRNA:   3'- -GCaGAGCCGCCgca-----UCGGGa--------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 48328 0.66 0.70567
Target:  5'- cCGggCUCGggggcgcgcGCGGCGaGGCCgaGgAGCCg -3'
miRNA:   3'- -GCa-GAGC---------CGCCGCaUCGGgaCgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 20248 0.66 0.70567
Target:  5'- cCGUCa-GGcCGGUGUGcgcGCCCaugGCAGCg -3'
miRNA:   3'- -GCAGagCC-GCCGCAU---CGGGa--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 19213 0.66 0.694928
Target:  5'- aCGUCcgcucauUCGuCGGCGcgGGCCCaGCAGgCCc -3'
miRNA:   3'- -GCAG-------AGCcGCCGCa-UCGGGaCGUC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.