miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 73531 0.65 0.7115
Target:  5'- cCGUgcgCGGCGGCGgccccgggacgcGCCC-GguGCCg -3'
miRNA:   3'- -GCAga-GCCGCCGCau----------CGGGaCguCGG- -5'
23588 3' -60.8 NC_005261.1 + 3013 0.66 0.676239
Target:  5'- aCGcgCUCGGC--CGUGGCCCUcuGC-GCCg -3'
miRNA:   3'- -GCa-GAGCCGccGCAUCGGGA--CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 18682 0.66 0.694928
Target:  5'- --aCUUGcggccccGCGGCGgGGCCUUGCucGGCCg -3'
miRNA:   3'- gcaGAGC-------CGCCGCaUCGGGACG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 3563 0.66 0.676239
Target:  5'- gGUCcUGGCGGCugGUGGUUC-GCGGCUc -3'
miRNA:   3'- gCAGaGCCGCCG--CAUCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 132696 0.66 0.686094
Target:  5'- cCGUCUCGcuGCGcGcCGaAGCCg-GCGGCCu -3'
miRNA:   3'- -GCAGAGC--CGC-C-GCaUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 84093 0.66 0.684126
Target:  5'- aCGgccgCGuGCGGCGUgccgugggacgAGCCCgcggucgugcggGCGGCCa -3'
miRNA:   3'- -GCaga-GC-CGCCGCA-----------UCGGGa-----------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 110408 0.66 0.676239
Target:  5'- uGgCUCGGCuGGC-UAGCUCgGCcGGCCg -3'
miRNA:   3'- gCaGAGCCG-CCGcAUCGGGaCG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 92933 0.66 0.686094
Target:  5'- gGUCUCGG-GGCGguacaaGGCCagccgguacgGCAGCa -3'
miRNA:   3'- gCAGAGCCgCCGCa-----UCGGga--------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 122163 0.66 0.686094
Target:  5'- uCGUCUacacgcgcCGGCucGGCGcgGGCCC-GCuGCCc -3'
miRNA:   3'- -GCAGA--------GCCG--CCGCa-UCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 102470 0.66 0.670308
Target:  5'- uGUCUCGGCccgagccgccuucgcGGCuGgcuucGGCCCagGUGGCCu -3'
miRNA:   3'- gCAGAGCCG---------------CCG-Ca----UCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 39920 0.66 0.676239
Target:  5'- gCG-CU-GGCGGCGgcGCCC-GCccccgaGGCCg -3'
miRNA:   3'- -GCaGAgCCGCCGCauCGGGaCG------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 53281 0.66 0.656434
Target:  5'- aCGcCUCGGCGGCcgccgaggaGGUgCUGCgcgaGGCCg -3'
miRNA:   3'- -GCaGAGCCGCCGca-------UCGgGACG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 104769 0.66 0.676239
Target:  5'- cCGgCUgCGGCGGCGgcugcggGGCggCUGCGGCg -3'
miRNA:   3'- -GCaGA-GCCGCCGCa------UCGg-GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 125665 0.66 0.656434
Target:  5'- -cUCUCGGCcccGCGUuGCCCgGCgcggGGCCc -3'
miRNA:   3'- gcAGAGCCGc--CGCAuCGGGaCG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 11229 0.66 0.676239
Target:  5'- cCGcCUgCGGCGGgGUcGGcCCCUGaCGGUCc -3'
miRNA:   3'- -GCaGA-GCCGCCgCA-UC-GGGAC-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 68762 0.66 0.686094
Target:  5'- ---aUCGcGCGGaUGUGGCCCUcgacgcgccGCAGCUc -3'
miRNA:   3'- gcagAGC-CGCC-GCAUCGGGA---------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 30537 0.66 0.676239
Target:  5'- aCG-UUCGGCGGCGcc-CCCgccGCGGCg -3'
miRNA:   3'- -GCaGAGCCGCCGCaucGGGa--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 27463 0.66 0.656434
Target:  5'- aCGuUCUCGGCGcGUGU-GCggUGCAGCa -3'
miRNA:   3'- -GC-AGAGCCGC-CGCAuCGggACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 19213 0.66 0.694928
Target:  5'- aCGUCcgcucauUCGuCGGCGcgGGCCCaGCAGgCCc -3'
miRNA:   3'- -GCAG-------AGCcGCCGCa-UCGGGaCGUC-GG- -5'
23588 3' -60.8 NC_005261.1 + 109097 0.66 0.676239
Target:  5'- gGUC-CGGCGG-GgcGCCCcccgGC-GCCa -3'
miRNA:   3'- gCAGaGCCGCCgCauCGGGa---CGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.