miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 323 0.74 0.271228
Target:  5'- gCGgCUgCGGCGGCGgcugcggcGGCCC-GCAGCCc -3'
miRNA:   3'- -GCaGA-GCCGCCGCa-------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 443 0.67 0.616663
Target:  5'- cCGgcgCg-GGCGGCGgGGCCCggggGCGcGCCc -3'
miRNA:   3'- -GCa--GagCCGCCGCaUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 1455 0.68 0.586924
Target:  5'- gCGcCUCGGCGuGCGgcuccAGCagcGCGGCCg -3'
miRNA:   3'- -GCaGAGCCGC-CGCa----UCGggaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 2605 0.69 0.490659
Target:  5'- cCGcCgUCGGCGGCGgGGCCgCcggGCGGCa -3'
miRNA:   3'- -GCaG-AGCCGCCGCaUCGG-Ga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 2835 0.67 0.6465
Target:  5'- aG-CUCgGGCGGCagGGCCg-GCGGCCc -3'
miRNA:   3'- gCaGAG-CCGCCGcaUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 3013 0.66 0.676239
Target:  5'- aCGcgCUCGGC--CGUGGCCCUcuGC-GCCg -3'
miRNA:   3'- -GCa-GAGCCGccGCAUCGGGA--CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 3563 0.66 0.676239
Target:  5'- gGUCcUGGCGGCugGUGGUUC-GCGGCUc -3'
miRNA:   3'- gCAGaGCCGCCG--CAUCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 3657 0.68 0.556487
Target:  5'- gCGUCUggagcgcaggccgCGGcCGGCaGgccgcGGCCCgcUGCAGCCg -3'
miRNA:   3'- -GCAGA-------------GCC-GCCG-Ca----UCGGG--ACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 3999 0.67 0.596815
Target:  5'- aGUCguagCGGCGGCucaUGGCCaCgcagGCcGCCa -3'
miRNA:   3'- gCAGa---GCCGCCGc--AUCGG-Ga---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 4217 0.71 0.419226
Target:  5'- gCGg--CGGCGGCGUAGUUgagggUGUAGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCAUCGGg----ACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 4292 0.67 0.6465
Target:  5'- ----aCGGCcGCG-GGCCCcGCGGCCg -3'
miRNA:   3'- gcagaGCCGcCGCaUCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 4400 0.74 0.277521
Target:  5'- cCGgg-CGGCGGCGgcGCgCUGCcgGGCCa -3'
miRNA:   3'- -GCagaGCCGCCGCauCGgGACG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 4475 0.72 0.35447
Target:  5'- cCGUCgcgCGGCgccgcGGCGUAGCCUgcGCGGgCCc -3'
miRNA:   3'- -GCAGa--GCCG-----CCGCAUCGGGa-CGUC-GG- -5'
23588 3' -60.8 NC_005261.1 + 4580 0.66 0.676239
Target:  5'- gGUC-CGGCGG-GgcGCCCcccgGC-GCCa -3'
miRNA:   3'- gCAGaGCCGCCgCauCGGGa---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 4826 0.72 0.339423
Target:  5'- gCGUUgggcgcaGGCGGCGgcGUCCgcgccGCAGCCu -3'
miRNA:   3'- -GCAGag-----CCGCCGCauCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 4908 0.73 0.324843
Target:  5'- --cUUCGGCGGCGgcuGCCUccgccGCGGCCg -3'
miRNA:   3'- gcaGAGCCGCCGCau-CGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 5067 0.66 0.70567
Target:  5'- gGUUgUCGGCGGCGacGCCgacgGCGGCg -3'
miRNA:   3'- gCAG-AGCCGCCGCauCGGga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 5329 0.69 0.528438
Target:  5'- cCG-CUCGGCGccgcccGCGgcGCCCgGCuuGCCg -3'
miRNA:   3'- -GCaGAGCCGC------CGCauCGGGaCGu-CGG- -5'
23588 3' -60.8 NC_005261.1 + 5439 0.67 0.616663
Target:  5'- gCGgccgCGGCGGCGgcaacagcGCCCccccgaGCAGCCc -3'
miRNA:   3'- -GCaga-GCCGCCGCau------CGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 5891 0.66 0.676239
Target:  5'- uGgCUCGGCuGGC-UAGCUCgGCcGGCCg -3'
miRNA:   3'- gCaGAGCCG-CCGcAUCGGGaCG-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.