miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 107177 1.12 0.000629
Target:  5'- cCGUCUCGGCGGCGUAGCCCUGCAGCCg -3'
miRNA:   3'- -GCAGAGCCGCCGCAUCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 56764 0.82 0.08494
Target:  5'- -cUCUgGGCGGCGUgGGCCCUGCuGCUg -3'
miRNA:   3'- gcAGAgCCGCCGCA-UCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 99471 0.8 0.104349
Target:  5'- ----gCGGCGGCGcUGGCCgCUGCGGCCa -3'
miRNA:   3'- gcagaGCCGCCGC-AUCGG-GACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 50719 0.8 0.112652
Target:  5'- uCGUCUuccaCGGCGGCG-AGCgCCUGCGcGCCa -3'
miRNA:   3'- -GCAGA----GCCGCCGCaUCG-GGACGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 44395 0.79 0.118526
Target:  5'- uG-CUCGGCGGCGccGCCCgGCGGCUg -3'
miRNA:   3'- gCaGAGCCGCCGCauCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35255 0.79 0.124685
Target:  5'- uGUCgcgcgCGGCGGCGgAGCCCgcggcgcccGCGGCCg -3'
miRNA:   3'- gCAGa----GCCGCCGCaUCGGGa--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 87433 0.79 0.124685
Target:  5'- cCGUCaUGGCGGCGgcGCCgggGCGGCCg -3'
miRNA:   3'- -GCAGaGCCGCCGCauCGGga-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 80582 0.79 0.13448
Target:  5'- aGUCUCGGgGGCGU-GCUCggGCGGCUg -3'
miRNA:   3'- gCAGAGCCgCCGCAuCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 15978 0.78 0.144618
Target:  5'- aCGg--CGGCGGCGcUGGCCCUGCugaugcgcgucggGGCCg -3'
miRNA:   3'- -GCagaGCCGCCGC-AUCGGGACG-------------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 8688 0.78 0.14498
Target:  5'- cCGUCUUGcaccuuGCGGCGUAGCCC-GCGcGCCu -3'
miRNA:   3'- -GCAGAGC------CGCCGCAUCGGGaCGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 99599 0.77 0.168249
Target:  5'- cCGUCaccgUCGGCGGCG-GGCUCggccGCGGCCa -3'
miRNA:   3'- -GCAG----AGCCGCCGCaUCGGGa---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 76955 0.77 0.168249
Target:  5'- gCGUCUCGGCGGgcaUGggcacGGCCCcggagGCGGCCa -3'
miRNA:   3'- -GCAGAGCCGCC---GCa----UCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 103736 0.77 0.169914
Target:  5'- -uUCUUGGCGGCGgcGCCCuccgccugcgccucgUGCAGCa -3'
miRNA:   3'- gcAGAGCCGCCGCauCGGG---------------ACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 104274 0.77 0.176721
Target:  5'- gGUCUCGGCGGCugcgcgGGCCUcGCAGgCCc -3'
miRNA:   3'- gCAGAGCCGCCGca----UCGGGaCGUC-GG- -5'
23588 3' -60.8 NC_005261.1 + 115769 0.77 0.181098
Target:  5'- cCGUCUCGGCGGCGUcgacguacgcguAGCCCagGaAGCg -3'
miRNA:   3'- -GCAGAGCCGCCGCA------------UCGGGa-CgUCGg -5'
23588 3' -60.8 NC_005261.1 + 25583 0.77 0.181098
Target:  5'- uCGUaCUCGGCuGCGaaggccgGGCCgUGCAGCCg -3'
miRNA:   3'- -GCA-GAGCCGcCGCa------UCGGgACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 46045 0.76 0.19014
Target:  5'- gCGcCagCGGCGGCGUcgGGCCCgGCGGCUc -3'
miRNA:   3'- -GCaGa-GCCGCCGCA--UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35025 0.76 0.194808
Target:  5'- gCGUCUCGGUcgcuGGCGcgccGCCCUaacgGCGGCCg -3'
miRNA:   3'- -GCAGAGCCG----CCGCau--CGGGA----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 75318 0.76 0.199576
Target:  5'- cCGUCggCGGCGcGCGgAGCCCUGUgaccuucgucGGCCu -3'
miRNA:   3'- -GCAGa-GCCGC-CGCaUCGGGACG----------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 6349 0.76 0.204446
Target:  5'- cCGUCgcgugCGGCGGCGgccgccAGCUCaaGCAGCCg -3'
miRNA:   3'- -GCAGa----GCCGCCGCa-----UCGGGa-CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.