Results 1 - 20 of 338 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23588 | 3' | -60.8 | NC_005261.1 | + | 108917 | 0.74 | 0.277521 |
Target: 5'- cCGgg-CGGCGGCGgcGCgCUGCcgGGCCa -3' miRNA: 3'- -GCagaGCCGCCGCauCGgGACG--UCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 6349 | 0.76 | 0.204446 |
Target: 5'- cCGUCgcgugCGGCGGCGgccgccAGCUCaaGCAGCCg -3' miRNA: 3'- -GCAGa----GCCGCCGCa-----UCGGGa-CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 69659 | 0.75 | 0.223896 |
Target: 5'- cCGcCUCGGCGGCGacgcgcucaaagAGCCCgcGCAGCa -3' miRNA: 3'- -GCaGAGCCGCCGCa-----------UCGGGa-CGUCGg -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 32738 | 0.75 | 0.235862 |
Target: 5'- uCGUCUCGGCGGgcuCGgGGCCC-GCGcGCCc -3' miRNA: 3'- -GCAGAGCCGCC---GCaUCGGGaCGU-CGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 79534 | 0.74 | 0.258987 |
Target: 5'- -cUCUCaGCGGCGc-GCCCUGaCGGCCc -3' miRNA: 3'- gcAGAGcCGCCGCauCGGGAC-GUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 38362 | 0.74 | 0.26505 |
Target: 5'- gCGcCgagCGGCGGCGgcGCgCgGCGGCCg -3' miRNA: 3'- -GCaGa--GCCGCCGCauCGgGaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 19807 | 0.74 | 0.271228 |
Target: 5'- gCGUCcgCGGCGGCGacAGCCagcGCGGCUg -3' miRNA: 3'- -GCAGa-GCCGCCGCa-UCGGga-CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 70856 | 0.74 | 0.271228 |
Target: 5'- gCGUCUucgCGGCGGUGgcGCugCCgGCGGCCu -3' miRNA: 3'- -GCAGA---GCCGCCGCauCG--GGaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 104840 | 0.74 | 0.271228 |
Target: 5'- gCGgCUgCGGCGGCGgcugcggcGGCCC-GCAGCCc -3' miRNA: 3'- -GCaGA-GCCGCCGCa-------UCGGGaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 46045 | 0.76 | 0.19014 |
Target: 5'- gCGcCagCGGCGGCGUcgGGCCCgGCGGCUc -3' miRNA: 3'- -GCaGa-GCCGCCGCA--UCGGGaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 25583 | 0.77 | 0.181098 |
Target: 5'- uCGUaCUCGGCuGCGaaggccgGGCCgUGCAGCCg -3' miRNA: 3'- -GCA-GAGCCGcCGCa------UCGGgACGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 99599 | 0.77 | 0.168249 |
Target: 5'- cCGUCaccgUCGGCGGCG-GGCUCggccGCGGCCa -3' miRNA: 3'- -GCAG----AGCCGCCGCaUCGGGa---CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 50719 | 0.8 | 0.112652 |
Target: 5'- uCGUCUuccaCGGCGGCG-AGCgCCUGCGcGCCa -3' miRNA: 3'- -GCAGA----GCCGCCGCaUCG-GGACGU-CGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 44395 | 0.79 | 0.118526 |
Target: 5'- uG-CUCGGCGGCGccGCCCgGCGGCUg -3' miRNA: 3'- gCaGAGCCGCCGCauCGGGaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 35255 | 0.79 | 0.124685 |
Target: 5'- uGUCgcgcgCGGCGGCGgAGCCCgcggcgcccGCGGCCg -3' miRNA: 3'- gCAGa----GCCGCCGCaUCGGGa--------CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 87433 | 0.79 | 0.124685 |
Target: 5'- cCGUCaUGGCGGCGgcGCCgggGCGGCCg -3' miRNA: 3'- -GCAGaGCCGCCGCauCGGga-CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 80582 | 0.79 | 0.13448 |
Target: 5'- aGUCUCGGgGGCGU-GCUCggGCGGCUg -3' miRNA: 3'- gCAGAGCCgCCGCAuCGGGa-CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 15978 | 0.78 | 0.144618 |
Target: 5'- aCGg--CGGCGGCGcUGGCCCUGCugaugcgcgucggGGCCg -3' miRNA: 3'- -GCagaGCCGCCGC-AUCGGGACG-------------UCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 8688 | 0.78 | 0.14498 |
Target: 5'- cCGUCUUGcaccuuGCGGCGUAGCCC-GCGcGCCu -3' miRNA: 3'- -GCAGAGC------CGCCGCAUCGGGaCGU-CGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 76955 | 0.77 | 0.168249 |
Target: 5'- gCGUCUCGGCGGgcaUGggcacGGCCCcggagGCGGCCa -3' miRNA: 3'- -GCAGAGCCGCC---GCa----UCGGGa----CGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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