miRNA display CGI


Results 21 - 40 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 6349 0.76 0.204446
Target:  5'- cCGUCgcgugCGGCGGCGgccgccAGCUCaaGCAGCCg -3'
miRNA:   3'- -GCAGa----GCCGCCGCa-----UCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 6433 0.68 0.553564
Target:  5'- cCGUCagGcGCGGCGggcgcggcgucggGGCCCaGCGGCg -3'
miRNA:   3'- -GCAGagC-CGCCGCa------------UCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 7035 0.71 0.377911
Target:  5'- gCGcCggCGGCgaccgcgccgcgGGCGUAGCCgCUGCGGCa -3'
miRNA:   3'- -GCaGa-GCCG------------CCGCAUCGG-GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 7186 0.66 0.70567
Target:  5'- gGUCguaggUGGCGGCGUcGCCg-GCgcgcucGGCCu -3'
miRNA:   3'- gCAGa----GCCGCCGCAuCGGgaCG------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 7656 0.67 0.616663
Target:  5'- gGcCgcgCGGCGGCGcuuccGCCCgGCgGGCCg -3'
miRNA:   3'- gCaGa--GCCGCCGCau---CGGGaCG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 7871 0.7 0.445294
Target:  5'- ---gUCGGUGGCGUAGaggaCCcGCAGCg -3'
miRNA:   3'- gcagAGCCGCCGCAUCg---GGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 8098 0.69 0.481408
Target:  5'- gCG-CUCGGCGGaCGgcGCgCgGCGGCUc -3'
miRNA:   3'- -GCaGAGCCGCC-GCauCGgGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 8688 0.78 0.14498
Target:  5'- cCGUCUUGcaccuuGCGGCGUAGCCC-GCGcGCCu -3'
miRNA:   3'- -GCAGAGC------CGCCGCAUCGGGaCGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 9367 0.71 0.377911
Target:  5'- uCGUCgUCGGCagcgacgaGGCGgGGCaCCgugGCGGCCa -3'
miRNA:   3'- -GCAG-AGCCG--------CCGCaUCG-GGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 10715 0.72 0.35447
Target:  5'- cCGUCUCGcucGUGGCcgccgaGUAcGCCCggcagGCAGCCg -3'
miRNA:   3'- -GCAGAGC---CGCCG------CAU-CGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 11148 0.68 0.577064
Target:  5'- cCGUCauugCGGCGGCGcGGCg--GCGGCa -3'
miRNA:   3'- -GCAGa---GCCGCCGCaUCGggaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 11229 0.66 0.676239
Target:  5'- cCGcCUgCGGCGGgGUcGGcCCCUGaCGGUCc -3'
miRNA:   3'- -GCaGA-GCCGCCgCA-UC-GGGAC-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 12503 0.71 0.419226
Target:  5'- cCG-CUugCGGCGGCcccagccgAGCCCgcgGCGGCCg -3'
miRNA:   3'- -GCaGA--GCCGCCGca------UCGGGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 13088 0.69 0.481408
Target:  5'- cCGUCggcgGGCGGCGggcucGGCUCgggggcgucgGCGGCCg -3'
miRNA:   3'- -GCAGag--CCGCCGCa----UCGGGa---------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 13848 0.66 0.676239
Target:  5'- gCGUCUCcucgucGcCGGCGUcGCCg-GCGGCCc -3'
miRNA:   3'- -GCAGAGc-----C-GCCGCAuCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 13998 0.7 0.472242
Target:  5'- uGcCcgCGGCGGCGguugGGCUgCUgGCAGCCa -3'
miRNA:   3'- gCaGa-GCCGCCGCa---UCGG-GA-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 14975 0.67 0.60673
Target:  5'- uCGUCacgGGCgaugGGCGgGGCCCgcgccuggGCGGCCg -3'
miRNA:   3'- -GCAGag-CCG----CCGCaUCGGGa-------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 15172 0.7 0.463166
Target:  5'- gCGUagCGGCGGCGgcGCCCgcgggaaacGCcGCCa -3'
miRNA:   3'- -GCAgaGCCGCCGCauCGGGa--------CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 15217 0.7 0.451505
Target:  5'- aCG-CUCGcggacgccacggccGCGGCcguaGUGGCCCUGCaggaGGCCa -3'
miRNA:   3'- -GCaGAGC--------------CGCCG----CAUCGGGACG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 15363 0.72 0.35447
Target:  5'- aCGUCcCGGCGGCGcucggcGCCCUcggcGCcGCCg -3'
miRNA:   3'- -GCAGaGCCGCCGCau----CGGGA----CGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.