miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 34211 0.71 0.683406
Target:  5'- cGCGGCGcGCA-GUACAgcGCgcgCGCCAu -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUa-CGa--GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 18807 0.71 0.683406
Target:  5'- aGCGGCGgcggGCAUGauugcgcucuCGUGCUCGCg-- -3'
miRNA:   3'- -CGCCGCa---CGUACau--------GUACGAGCGguc -5'
23588 5' -54.9 NC_005261.1 + 43171 0.71 0.703947
Target:  5'- cGCgGGCGUGCAUGgcggaggGCGgucUGCggCGCCGa -3'
miRNA:   3'- -CG-CCGCACGUACa------UGU---ACGa-GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 112461 0.7 0.714127
Target:  5'- uGCGGgcCGUGCuaaacAUGcgcgGCAUGCUCGCCc- -3'
miRNA:   3'- -CGCC--GCACG-----UACa---UGUACGAGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 87492 0.7 0.714127
Target:  5'- cGCGGcCGUGC-UGgcgcGCAggcGCUCGCCGc -3'
miRNA:   3'- -CGCC-GCACGuACa---UGUa--CGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 126044 0.7 0.724235
Target:  5'- gGCGGCGcUGCAUGgugGCGgcggcGCUgGCCu- -3'
miRNA:   3'- -CGCCGC-ACGUACa--UGUa----CGAgCGGuc -5'
23588 5' -54.9 NC_005261.1 + 100608 0.7 0.744195
Target:  5'- cGCGGcCGcGCAgGUGCAggucccGCUCGCaCAGg -3'
miRNA:   3'- -CGCC-GCaCGUaCAUGUa-----CGAGCG-GUC- -5'
23588 5' -54.9 NC_005261.1 + 36968 0.7 0.744195
Target:  5'- cGCGGCGcagaGCucgGUGCggGCUCcaGCCGGa -3'
miRNA:   3'- -CGCCGCa---CGua-CAUGuaCGAG--CGGUC- -5'
23588 5' -54.9 NC_005261.1 + 46816 0.7 0.744195
Target:  5'- gGCGGCGUcGCGcuccACGUcCUCGCCGGg -3'
miRNA:   3'- -CGCCGCA-CGUaca-UGUAcGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 72570 0.7 0.744195
Target:  5'- gGCGGCGcUGCGc--GCcgGCgcgCGCCAGa -3'
miRNA:   3'- -CGCCGC-ACGUacaUGuaCGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 108926 0.7 0.754027
Target:  5'- gGCGGCGcgcUGCcgGgcCAgGcCUCGCCGGa -3'
miRNA:   3'- -CGCCGC---ACGuaCauGUaC-GAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 21399 0.7 0.754027
Target:  5'- cGCGGCGgggacgGCcacGUACAccUGCUCGUCGu -3'
miRNA:   3'- -CGCCGCa-----CGua-CAUGU--ACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 4409 0.7 0.754027
Target:  5'- gGCGGCGcgcUGCcgGgcCAgGcCUCGCCGGa -3'
miRNA:   3'- -CGCCGC---ACGuaCauGUaC-GAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 70947 0.7 0.754027
Target:  5'- cGCGGCG-GCggGgggGCugcUGCUgGCCGGg -3'
miRNA:   3'- -CGCCGCaCGuaCa--UGu--ACGAgCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 104663 0.7 0.754027
Target:  5'- cGCuGGCGgGCGUGUGC-UGCggcagCGCCuGg -3'
miRNA:   3'- -CG-CCGCaCGUACAUGuACGa----GCGGuC- -5'
23588 5' -54.9 NC_005261.1 + 84230 0.69 0.761813
Target:  5'- cGCGGCG-GCGccUGUGCGccgcgcgcuggaGCUCGCCGc -3'
miRNA:   3'- -CGCCGCaCGU--ACAUGUa-----------CGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 98134 0.69 0.763748
Target:  5'- uGCGGCGggcugGCGUGcgACGcGCU-GCCAGc -3'
miRNA:   3'- -CGCCGCa----CGUACa-UGUaCGAgCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 49598 0.69 0.763748
Target:  5'- cGCGGCGcUGCugucaaaGUACAcgcacaGCUCGCCGu -3'
miRNA:   3'- -CGCCGC-ACGua-----CAUGUa-----CGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 19575 0.69 0.772393
Target:  5'- gGCGGUugauucuccagagGUGCGUGUGCAgguccucGCgguagcgCGCCAGc -3'
miRNA:   3'- -CGCCG-------------CACGUACAUGUa------CGa------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 63369 0.69 0.773347
Target:  5'- cGCGGUGcGgGUGUGCcgGgUCGCCc- -3'
miRNA:   3'- -CGCCGCaCgUACAUGuaCgAGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.