miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 133900 0.67 0.890003
Target:  5'- cGCGGCGcgcugcuggccuggcUGC-UGUACGUcGCguucguguaccugCGCCAGg -3'
miRNA:   3'- -CGCCGC---------------ACGuACAUGUA-CGa------------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 136909 0.67 0.890003
Target:  5'- cGCGGCG-GCGUcccGgagcGCGUGCcgcCGCCGGc -3'
miRNA:   3'- -CGCCGCaCGUA---Ca---UGUACGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 16160 0.67 0.890003
Target:  5'- cGCgGGCGUGCGcgacccGUACAUGauCUCgGCCAu -3'
miRNA:   3'- -CG-CCGCACGUa-----CAUGUAC--GAG-CGGUc -5'
23588 5' -54.9 NC_005261.1 + 29728 0.67 0.889313
Target:  5'- cGCGGCGUggccGCggGUagcgucgcggcgcGCGUGCgCGCCGa -3'
miRNA:   3'- -CGCCGCA----CGuaCA-------------UGUACGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 130637 0.67 0.883004
Target:  5'- cGCGGgGcGCGcGUGC--GCUCGCCGa -3'
miRNA:   3'- -CGCCgCaCGUaCAUGuaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 52226 0.67 0.88014
Target:  5'- cGCGGCGcUGCGgccgGUACGguuucgugggaggGCgcuguccgCGCCGGg -3'
miRNA:   3'- -CGCCGC-ACGUa---CAUGUa------------CGa-------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 55510 0.67 0.875774
Target:  5'- cGCGGCuGgacgGCGUGgacUGCcUGCUCGUgGGg -3'
miRNA:   3'- -CGCCG-Ca---CGUAC---AUGuACGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 63731 0.67 0.875774
Target:  5'- aGCGGCGUGCGcaUGgccgcgGCGgcguagGC-CGCCGu -3'
miRNA:   3'- -CGCCGCACGU--ACa-----UGUa-----CGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 74282 0.67 0.875774
Target:  5'- cGCGGCGgGCGgg-GCGgucGC-CGCCGGg -3'
miRNA:   3'- -CGCCGCaCGUacaUGUa--CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 28106 0.67 0.875774
Target:  5'- gGCGGgGUGCGUcaGCGUcaggacggGCgCGCCGGg -3'
miRNA:   3'- -CGCCgCACGUAcaUGUA--------CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 3217 0.67 0.875774
Target:  5'- cGCGGCcgcGUGCGg--GCccGCcgCGCCAGg -3'
miRNA:   3'- -CGCCG---CACGUacaUGuaCGa-GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 54238 0.67 0.875774
Target:  5'- cGCGGCGcGCGcucaUGUGCA-GCgCGCCc- -3'
miRNA:   3'- -CGCCGCaCGU----ACAUGUaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 58123 0.67 0.875774
Target:  5'- cGCGGCGcccaaGCcgGUACcgcgGCgcgcgCGCCGGu -3'
miRNA:   3'- -CGCCGCa----CGuaCAUGua--CGa----GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 90795 0.67 0.875774
Target:  5'- -gGGCGccUGUcgG-ACGUGUUCGCCAc -3'
miRNA:   3'- cgCCGC--ACGuaCaUGUACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 134411 0.67 0.872819
Target:  5'- -aGGUGUGCGUGaACugcugcuccacgcUGCUCGCgGGg -3'
miRNA:   3'- cgCCGCACGUACaUGu------------ACGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 31906 0.67 0.868319
Target:  5'- gGCGGCGggGcCGUGgcuCAcgacggaagacUGCUCGCCGa -3'
miRNA:   3'- -CGCCGCa-C-GUACau-GU-----------ACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 74478 0.67 0.863739
Target:  5'- cGCGGCGUGCcUGgGCGggaucucgGCgcucuucggggcggCGCCGGg -3'
miRNA:   3'- -CGCCGCACGuACaUGUa-------CGa-------------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 82850 0.67 0.860643
Target:  5'- aGCGGCGgcgGCAgcgGCG-GCggGCCAGg -3'
miRNA:   3'- -CGCCGCa--CGUacaUGUaCGagCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 127992 0.67 0.860643
Target:  5'- cGCGGCG-GCGaGUGCGcggGCcCGCCuGg -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUa--CGaGCGGuC- -5'
23588 5' -54.9 NC_005261.1 + 31980 0.67 0.860643
Target:  5'- aGCGGCGgcgGCGgcccgGUAgGgcgcgGCggccgCGCCAGg -3'
miRNA:   3'- -CGCCGCa--CGUa----CAUgUa----CGa----GCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.