miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 22110 0.73 0.589829
Target:  5'- gGCGGUGUGCGgagaGUGCGUGCgguauaCGgCGGg -3'
miRNA:   3'- -CGCCGCACGUa---CAUGUACGa-----GCgGUC- -5'
23588 5' -54.9 NC_005261.1 + 23475 0.67 0.860643
Target:  5'- cGCGGCG-GCGaGUGCGcggGCcCGCCuGg -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUa--CGaGCGGuC- -5'
23588 5' -54.9 NC_005261.1 + 23773 0.66 0.921398
Target:  5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3'
miRNA:   3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 23830 0.66 0.921398
Target:  5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3'
miRNA:   3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 25111 0.68 0.819193
Target:  5'- cGCGGCGggcgagaGCAUGUcCAUGC-CGagcuCCAGg -3'
miRNA:   3'- -CGCCGCa------CGUACAuGUACGaGC----GGUC- -5'
23588 5' -54.9 NC_005261.1 + 28106 0.67 0.875774
Target:  5'- gGCGGgGUGCGUcaGCGUcaggacggGCgCGCCGGg -3'
miRNA:   3'- -CGCCgCACGUAcaUGUA--------CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 29298 0.8 0.237388
Target:  5'- cGCGGCGUGCGUGgGCGUGCUgGgCCc- -3'
miRNA:   3'- -CGCCGCACGUACaUGUACGAgC-GGuc -5'
23588 5' -54.9 NC_005261.1 + 29703 0.68 0.819193
Target:  5'- gGCGGCcUGCGUGgcCAUGagcCGCCGc -3'
miRNA:   3'- -CGCCGcACGUACauGUACga-GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 29728 0.67 0.889313
Target:  5'- cGCGGCGUggccGCggGUagcgucgcggcgcGCGUGCgCGCCGa -3'
miRNA:   3'- -CGCCGCA----CGuaCA-------------UGUACGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 30386 0.69 0.792143
Target:  5'- cGCGGCGcGgGUGgagguggaggACAUGCggGCCGGg -3'
miRNA:   3'- -CGCCGCaCgUACa---------UGUACGagCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 31016 0.79 0.295138
Target:  5'- cUGGCGaGCAUGUACAUGCaCGCCGc -3'
miRNA:   3'- cGCCGCaCGUACAUGUACGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 31906 0.67 0.868319
Target:  5'- gGCGGCGggGcCGUGgcuCAcgacggaagacUGCUCGCCGa -3'
miRNA:   3'- -CGCCGCa-C-GUACau-GU-----------ACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 31980 0.67 0.860643
Target:  5'- aGCGGCGgcgGCGgcccgGUAgGgcgcgGCggccgCGCCAGg -3'
miRNA:   3'- -CGCCGCa--CGUa----CAUgUa----CGa----GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 32392 0.67 0.890003
Target:  5'- cGCGGCG-GCGUcccGgagcGCGUGCcgcCGCCGGc -3'
miRNA:   3'- -CGCCGCaCGUA---Ca---UGUACGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 33747 0.66 0.90329
Target:  5'- cGCGGCGccgggGCcgG-GCccGCUCGCgGGg -3'
miRNA:   3'- -CGCCGCa----CGuaCaUGuaCGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 34211 0.71 0.683406
Target:  5'- cGCGGCGcGCA-GUACAgcGCgcgCGCCAu -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUa-CGa--GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 36278 0.68 0.844656
Target:  5'- gGCGGcCGUGCc----CcgGCUCGCCAa -3'
miRNA:   3'- -CGCC-GCACGuacauGuaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 36968 0.7 0.744195
Target:  5'- cGCGGCGcagaGCucgGUGCggGCUCcaGCCGGa -3'
miRNA:   3'- -CGCCGCa---CGua-CAUGuaCGAG--CGGUC- -5'
23588 5' -54.9 NC_005261.1 + 38494 0.67 0.894762
Target:  5'- gGCGGCGUcgacuggaGCGUcGUAUAaggcgcgcgcuggcUGCgcgCGCCGGg -3'
miRNA:   3'- -CGCCGCA--------CGUA-CAUGU--------------ACGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 39118 0.67 0.8961
Target:  5'- cCGGUGUaCGUGUACGaguuuucUGC-CGCCGGc -3'
miRNA:   3'- cGCCGCAcGUACAUGU-------ACGaGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.