miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 1951 0.68 0.836358
Target:  5'- cGCGGCGcGCAgGUACAcGUgCGCCu- -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 3217 0.67 0.875774
Target:  5'- cGCGGCcgcGUGCGg--GCccGCcgCGCCAGg -3'
miRNA:   3'- -CGCCG---CACGUacaUGuaCGa-GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 4216 0.68 0.852753
Target:  5'- cGCGGCGgcgGCGUaGUugAggguguaGC-CGCCGGg -3'
miRNA:   3'- -CGCCGCa--CGUA-CAugUa------CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 4409 0.7 0.754027
Target:  5'- gGCGGCGcgcUGCcgGgcCAgGcCUCGCCGGa -3'
miRNA:   3'- -CGCCGC---ACGuaCauGUaC-GAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 12770 0.66 0.921398
Target:  5'- gGCGGCGgugGCggGgg---GCUCGUCGGc -3'
miRNA:   3'- -CGCCGCa--CGuaCauguaCGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 13756 0.75 0.441523
Target:  5'- uCGGCG-GCAUGUACGUGggCGCCc- -3'
miRNA:   3'- cGCCGCaCGUACAUGUACgaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 14662 0.66 0.913823
Target:  5'- aGCGGUGUacgggggccgGCGUGUgacggugcgcgaggGCAcGCUCGCgCGGu -3'
miRNA:   3'- -CGCCGCA----------CGUACA--------------UGUaCGAGCG-GUC- -5'
23588 5' -54.9 NC_005261.1 + 14855 0.68 0.852753
Target:  5'- gGCGGCGgcGCAUcGcGCA-GUUCGCCAu -3'
miRNA:   3'- -CGCCGCa-CGUA-CaUGUaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 14961 0.66 0.915608
Target:  5'- aGCgGGCGUGCcUGggGCGacUGCgcggccgCGCCGGc -3'
miRNA:   3'- -CG-CCGCACGuACa-UGU--ACGa------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 15065 0.67 0.896766
Target:  5'- cGCGGCGggGUcgGggguCAgGCUCGCCc- -3'
miRNA:   3'- -CGCCGCa-CGuaCau--GUaCGAGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 15142 0.66 0.90329
Target:  5'- cGCGGCGaaaugGCGUG-GCcgGC-CGCCu- -3'
miRNA:   3'- -CGCCGCa----CGUACaUGuaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 15185 0.66 0.90329
Target:  5'- aGCGGCGgGCAgagaagggGUGCcUGCU-GCCGa -3'
miRNA:   3'- -CGCCGCaCGUa-------CAUGuACGAgCGGUc -5'
23588 5' -54.9 NC_005261.1 + 16160 0.67 0.890003
Target:  5'- cGCgGGCGUGCGcgacccGUACAUGauCUCgGCCAu -3'
miRNA:   3'- -CG-CCGCACGUa-----CAUGUAC--GAG-CGGUc -5'
23588 5' -54.9 NC_005261.1 + 16755 0.71 0.652289
Target:  5'- cGUGGCGgcaGCcgGUACGccgaggaGCUCGCCAu -3'
miRNA:   3'- -CGCCGCa--CGuaCAUGUa------CGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 18807 0.71 0.683406
Target:  5'- aGCGGCGgcggGCAUGauugcgcucuCGUGCUCGCg-- -3'
miRNA:   3'- -CGCCGCa---CGUACau--------GUACGAGCGguc -5'
23588 5' -54.9 NC_005261.1 + 19266 0.74 0.52849
Target:  5'- cGCGGCGUGCAggaccuUGgccACGUGCgccgCgGCCAGc -3'
miRNA:   3'- -CGCCGCACGU------ACa--UGUACGa---G-CGGUC- -5'
23588 5' -54.9 NC_005261.1 + 19575 0.69 0.772393
Target:  5'- gGCGGUugauucuccagagGUGCGUGUGCAgguccucGCgguagcgCGCCAGc -3'
miRNA:   3'- -CGCCG-------------CACGUACAUGUa------CGa------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 19800 0.66 0.92694
Target:  5'- cGCGGCG-GCGUccGCGgcgGCgacaGCCAGc -3'
miRNA:   3'- -CGCCGCaCGUAcaUGUa--CGag--CGGUC- -5'
23588 5' -54.9 NC_005261.1 + 21399 0.7 0.754027
Target:  5'- cGCGGCGgggacgGCcacGUACAccUGCUCGUCGu -3'
miRNA:   3'- -CGCCGCa-----CGua-CAUGU--ACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 21824 0.74 0.508544
Target:  5'- cGCGGCGggcGCGcGUGCGggcggGCUCGCCc- -3'
miRNA:   3'- -CGCCGCa--CGUaCAUGUa----CGAGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.