miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 98134 0.69 0.763748
Target:  5'- uGCGGCGggcugGCGUGcgACGcGCU-GCCAGc -3'
miRNA:   3'- -CGCCGCa----CGUACa-UGUaCGAgCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 43171 0.71 0.703947
Target:  5'- cGCgGGCGUGCAUGgcggaggGCGgucUGCggCGCCGa -3'
miRNA:   3'- -CG-CCGCACGUACa------UGU---ACGa-GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 126044 0.7 0.724235
Target:  5'- gGCGGCGcUGCAUGgugGCGgcggcGCUgGCCu- -3'
miRNA:   3'- -CGCCGC-ACGUACa--UGUa----CGAgCGGuc -5'
23588 5' -54.9 NC_005261.1 + 72570 0.7 0.744195
Target:  5'- gGCGGCGcUGCGc--GCcgGCgcgCGCCAGa -3'
miRNA:   3'- -CGCCGC-ACGUacaUGuaCGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 46816 0.7 0.744195
Target:  5'- gGCGGCGUcGCGcuccACGUcCUCGCCGGg -3'
miRNA:   3'- -CGCCGCA-CGUaca-UGUAcGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 108926 0.7 0.754027
Target:  5'- gGCGGCGcgcUGCcgGgcCAgGcCUCGCCGGa -3'
miRNA:   3'- -CGCCGC---ACGuaCauGUaC-GAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 21399 0.7 0.754027
Target:  5'- cGCGGCGgggacgGCcacGUACAccUGCUCGUCGu -3'
miRNA:   3'- -CGCCGCa-----CGua-CAUGU--ACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 70947 0.7 0.754027
Target:  5'- cGCGGCG-GCggGgggGCugcUGCUgGCCGGg -3'
miRNA:   3'- -CGCCGCaCGuaCa--UGu--ACGAgCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 84230 0.69 0.761813
Target:  5'- cGCGGCG-GCGccUGUGCGccgcgcgcuggaGCUCGCCGc -3'
miRNA:   3'- -CGCCGCaCGU--ACAUGUa-----------CGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 34211 0.71 0.683406
Target:  5'- cGCGGCGcGCA-GUACAgcGCgcgCGCCAu -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUa-CGa--GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 16755 0.71 0.652289
Target:  5'- cGUGGCGgcaGCcgGUACGccgaggaGCUCGCCAu -3'
miRNA:   3'- -CGCCGCa--CGuaCAUGUa------CGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 84481 0.72 0.610604
Target:  5'- cGCGGCGUacGuCcgGcACGUGCUCGCCc- -3'
miRNA:   3'- -CGCCGCA--C-GuaCaUGUACGAGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 31016 0.79 0.295138
Target:  5'- cUGGCGaGCAUGUACAUGCaCGCCGc -3'
miRNA:   3'- cGCCGCaCGUACAUGUACGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 71380 0.78 0.331689
Target:  5'- gGUGGCGUGCGUGUGCAccaaGUUC-CCGGa -3'
miRNA:   3'- -CGCCGCACGUACAUGUa---CGAGcGGUC- -5'
23588 5' -54.9 NC_005261.1 + 13756 0.75 0.441523
Target:  5'- uCGGCG-GCAUGUACGUGggCGCCc- -3'
miRNA:   3'- cGCCGCaCGUACAUGUACgaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 99027 0.74 0.488922
Target:  5'- aUGGCG-GCuaccgGUGCGgcUGCUCGCCGGg -3'
miRNA:   3'- cGCCGCaCGua---CAUGU--ACGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 124349 0.74 0.49869
Target:  5'- gGCGGCGUGUAcuuccUGUACGaccggGC-CGCCGGc -3'
miRNA:   3'- -CGCCGCACGU-----ACAUGUa----CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 126341 0.74 0.508544
Target:  5'- cGCGGCGggcGCGcGUGCGggcggGCUCGCCc- -3'
miRNA:   3'- -CGCCGCa--CGUaCAUGUa----CGAGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 19266 0.74 0.52849
Target:  5'- cGCGGCGUGCAggaccuUGgccACGUGCgccgCgGCCAGc -3'
miRNA:   3'- -CGCCGCACGU------ACa--UGUACGa---G-CGGUC- -5'
23588 5' -54.9 NC_005261.1 + 126628 0.73 0.589829
Target:  5'- gGCGGUGUGCGgagaGUGCGUGCgguauaCGgCGGg -3'
miRNA:   3'- -CGCCGCACGUa---CAUGUACGa-----GCgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.