miRNA display CGI


Results 21 - 40 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 5' -62.8 NC_005261.1 + 59683 0.66 0.550338
Target:  5'- gAAGcCGCCCucggccagcacGCGCUCcgGGCagacccGCCCGCc -3'
miRNA:   3'- -UUCuGCGGG-----------UGCGGGuaCCG------CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 127775 0.66 0.550338
Target:  5'- gAAGACGCCCGgcUGCUCGagcGGCggGCCgGCg -3'
miRNA:   3'- -UUCUGCGGGU--GCGGGUa--CCG--CGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 118075 0.66 0.550338
Target:  5'- cGGcCGCagCCGCGCUCGucugcUGGCGgCCCGCc -3'
miRNA:   3'- uUCuGCG--GGUGCGGGU-----ACCGC-GGGUG- -5'
23589 5' -62.8 NC_005261.1 + 105960 0.66 0.550338
Target:  5'- -cGAUgGCCUcgGCGCCCAgcgcGGCGUCgACg -3'
miRNA:   3'- uuCUG-CGGG--UGCGGGUa---CCGCGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 102888 0.66 0.550338
Target:  5'- cGGGCGggagcCCCGCGCCCcUG--GCCCGCa -3'
miRNA:   3'- uUCUGC-----GGGUGCGGGuACcgCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 98436 0.66 0.550338
Target:  5'- --uGCGgaCCCGgGCCgGUaggcGGCGCCCGCa -3'
miRNA:   3'- uucUGC--GGGUgCGGgUA----CCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 77977 0.66 0.550338
Target:  5'- ---cUGCCCccaGCGCCCGUGccGUGCCUGCc -3'
miRNA:   3'- uucuGCGGG---UGCGGGUAC--CGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 94422 0.66 0.547407
Target:  5'- -cGACGUCCGCGgcgccgccccccucCCCGUccGCGUCCGCg -3'
miRNA:   3'- uuCUGCGGGUGC--------------GGGUAc-CGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 42810 0.66 0.540587
Target:  5'- cAGACGUCCGCGgCC---GCGCCgGCc -3'
miRNA:   3'- uUCUGCGGGUGCgGGuacCGCGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 1330 0.66 0.540587
Target:  5'- cGGGACGCcgCCGCGCC----GCGCCUGCa -3'
miRNA:   3'- -UUCUGCG--GGUGCGGguacCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 8423 0.66 0.540587
Target:  5'- -cGACGCUCACGgCCAcagaccGCGCCCc- -3'
miRNA:   3'- uuCUGCGGGUGCgGGUac----CGCGGGug -5'
23589 5' -62.8 NC_005261.1 + 47622 0.66 0.540587
Target:  5'- gGGGGCGgCCGCGgCCGccGcGCGCaCCGCg -3'
miRNA:   3'- -UUCUGCgGGUGCgGGUa-C-CGCG-GGUG- -5'
23589 5' -62.8 NC_005261.1 + 70470 0.66 0.540587
Target:  5'- ----aGCCCGCGCCgCG-GGUGCgCGCg -3'
miRNA:   3'- uucugCGGGUGCGG-GUaCCGCGgGUG- -5'
23589 5' -62.8 NC_005261.1 + 75513 0.66 0.540587
Target:  5'- uGGAgGCgCACG-CCGUGGuCGCCgCGCu -3'
miRNA:   3'- uUCUgCGgGUGCgGGUACC-GCGG-GUG- -5'
23589 5' -62.8 NC_005261.1 + 88783 0.66 0.540587
Target:  5'- ----gGCCCugGCCgccGGCGCCgCGCa -3'
miRNA:   3'- uucugCGGGugCGGguaCCGCGG-GUG- -5'
23589 5' -62.8 NC_005261.1 + 101568 0.66 0.540587
Target:  5'- gAGGAUGCgCUcggcGCGCgCCGUGGCcUCCGCg -3'
miRNA:   3'- -UUCUGCG-GG----UGCG-GGUACCGcGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 102673 0.66 0.540587
Target:  5'- -cGGCGCCCAgCGCC----GCGUCCGCc -3'
miRNA:   3'- uuCUGCGGGU-GCGGguacCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 126069 0.66 0.540587
Target:  5'- cAGcCGCCCGCcgGCCUcgGcgggcGCGCCCAUc -3'
miRNA:   3'- uUCuGCGGGUG--CGGGuaC-----CGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 36047 0.66 0.540587
Target:  5'- --cGCGaCCCGCaGCCCAccGCGCCaCACc -3'
miRNA:   3'- uucUGC-GGGUG-CGGGUacCGCGG-GUG- -5'
23589 5' -62.8 NC_005261.1 + 130149 0.66 0.536703
Target:  5'- cGAG-CGCaCCACGUCCuccaccgucagcGGCGCCgGCa -3'
miRNA:   3'- -UUCuGCG-GGUGCGGGua----------CCGCGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.