miRNA display CGI


Results 41 - 60 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 107896 0.77 0.174385
Target:  5'- cCCGCUUguCCGCGGCCGCGgccUCGGCc -3'
miRNA:   3'- cGGUGAGguGGCGCCGGUGCa--GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 102940 0.77 0.174385
Target:  5'- cGCCGCcgCCGCUGCGGCgGCGgccgCgGGCg -3'
miRNA:   3'- -CGGUGa-GGUGGCGCCGgUGCa---GgUCG- -5'
23590 5' -60.4 NC_005261.1 + 109814 0.77 0.174385
Target:  5'- cGCCGCuUCCGCCGCGGCgGCcgccgaaUCUGGCg -3'
miRNA:   3'- -CGGUG-AGGUGGCGCCGgUGc------AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 49537 0.77 0.174385
Target:  5'- aGCCGC-CguCCGCGGCCACcacgugGUUCAGCa -3'
miRNA:   3'- -CGGUGaGguGGCGCCGGUG------CAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 1495 0.77 0.183118
Target:  5'- gGCCA--CCGCCGCGGCCGgcagcuCGUCgGGCg -3'
miRNA:   3'- -CGGUgaGGUGGCGCCGGU------GCAGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 83335 0.77 0.192236
Target:  5'- cGCCGCccgccgCCACCGUGGCCcgcaggaagGCGUCCAcgucgGCg -3'
miRNA:   3'- -CGGUGa-----GGUGGCGCCGG---------UGCAGGU-----CG- -5'
23590 5' -60.4 NC_005261.1 + 37550 0.77 0.192236
Target:  5'- cGCCGCUcCCGCCGCcGCCaccgggguGCGUCCuGCc -3'
miRNA:   3'- -CGGUGA-GGUGGCGcCGG--------UGCAGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 28204 0.77 0.192236
Target:  5'- gGCCucgCCGCCGCuGCCGCGgccCCAGCu -3'
miRNA:   3'- -CGGugaGGUGGCGcCGGUGCa--GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 87945 0.77 0.196943
Target:  5'- aGCCGCgcgCCGCCaCGGCC-CG-CCGGCg -3'
miRNA:   3'- -CGGUGa--GGUGGcGCCGGuGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 106428 0.76 0.20175
Target:  5'- gGCCGCggUCCAcgcCCGCccagucGGCCACGUCCGcGCg -3'
miRNA:   3'- -CGGUG--AGGU---GGCG------CCGGUGCAGGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 104947 0.76 0.20175
Target:  5'- cGCCaaGCUCCGCCGCgcaGGCCGCaa-CAGCg -3'
miRNA:   3'- -CGG--UGAGGUGGCG---CCGGUGcagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 109312 0.76 0.206163
Target:  5'- aGCCGCccuggccUCCGCgagCGCGGCCGCGgggUCGGCg -3'
miRNA:   3'- -CGGUG-------AGGUG---GCGCCGGUGCa--GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 67384 0.76 0.21167
Target:  5'- cGCCGCgaagaCCGCCGCGcgcGCCAgGaCCAGCg -3'
miRNA:   3'- -CGGUGa----GGUGGCGC---CGGUgCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 97846 0.76 0.21167
Target:  5'- gGCgGCgggcgCCGCCGCGGCagCGCGgCCGGCa -3'
miRNA:   3'- -CGgUGa----GGUGGCGCCG--GUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 102622 0.76 0.21167
Target:  5'- cGCCAgcggcCUCgGCCGCGGCUuCGUCC-GCg -3'
miRNA:   3'- -CGGU-----GAGgUGGCGCCGGuGCAGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 100994 0.76 0.21167
Target:  5'- cGCCgcGCUCCGCCaGCcG-CGCGUCCAGCg -3'
miRNA:   3'- -CGG--UGAGGUGG-CGcCgGUGCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 65516 0.76 0.216269
Target:  5'- gGCgCACUCCAUcacccagCGCGGCCGCG-CgGGCa -3'
miRNA:   3'- -CG-GUGAGGUG-------GCGCCGGUGCaGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 60240 0.76 0.216785
Target:  5'- gGCCGcCUCCGCCGCGGCgggaGCGg-CGGCc -3'
miRNA:   3'- -CGGU-GAGGUGGCGCCGg---UGCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 12346 0.76 0.216785
Target:  5'- cGCgGCcgCCGCCGCGGCgGCaaCCGGCg -3'
miRNA:   3'- -CGgUGa-GGUGGCGCCGgUGcaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 49247 0.76 0.216785
Target:  5'- gGCCg--CCGCCGCGGCgGCGU-CGGCg -3'
miRNA:   3'- -CGGugaGGUGGCGCCGgUGCAgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.