miRNA display CGI


Results 41 - 60 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 81719 0.66 0.709197
Target:  5'- uCCGCg-CGCagcaGCGGCaCGCGUCC-GCa -3'
miRNA:   3'- cGGUGagGUGg---CGCCG-GUGCAGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 81216 0.66 0.709197
Target:  5'- aGCCGgaCCACCGUGGCgCccgaggGCGgCgGGCa -3'
miRNA:   3'- -CGGUgaGGUGGCGCCG-G------UGCaGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 43685 0.66 0.709197
Target:  5'- aGCgGCUCCACgGCGagguccuggccuGCCACGcgcugcgCgAGCa -3'
miRNA:   3'- -CGgUGAGGUGgCGC------------CGGUGCa------GgUCG- -5'
23590 5' -60.4 NC_005261.1 + 20918 0.66 0.709197
Target:  5'- -aCACUCCccgaGCUGCuGGCCAgCGgcauccuccUCCGGCu -3'
miRNA:   3'- cgGUGAGG----UGGCG-CCGGU-GC---------AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 11021 0.66 0.709197
Target:  5'- gGCCucgUCGCCG-GGCC-CGUCCcccGGCg -3'
miRNA:   3'- -CGGugaGGUGGCgCCGGuGCAGG---UCG- -5'
23590 5' -60.4 NC_005261.1 + 125856 0.66 0.709197
Target:  5'- aGCCaaggcggcaaACUCgGCCGgGGCgGCGcCCuuGGCu -3'
miRNA:   3'- -CGG----------UGAGgUGGCgCCGgUGCaGG--UCG- -5'
23590 5' -60.4 NC_005261.1 + 92904 0.66 0.709197
Target:  5'- --uGCUCCAgCGagacgagGGCCACGccgugCCGGCg -3'
miRNA:   3'- cggUGAGGUgGCg------CCGGUGCa----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 108545 0.66 0.709197
Target:  5'- gGCCAgcgCCGCCGacacGCgCACGUCguGCg -3'
miRNA:   3'- -CGGUga-GGUGGCgc--CG-GUGCAGguCG- -5'
23590 5' -60.4 NC_005261.1 + 21653 0.66 0.709197
Target:  5'- cGCCGCUgCCgcACCGcCGG-UACGugcUCCGGCu -3'
miRNA:   3'- -CGGUGA-GG--UGGC-GCCgGUGC---AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 103418 0.66 0.709197
Target:  5'- uCCGCgcggGCCGCGGCCACG-CgCGcGCg -3'
miRNA:   3'- cGGUGagg-UGGCGCCGGUGCaG-GU-CG- -5'
23590 5' -60.4 NC_005261.1 + 86468 0.66 0.709197
Target:  5'- cCCGCgCCGuugauggaCGCGGCCGgG-CCGGCg -3'
miRNA:   3'- cGGUGaGGUg-------GCGCCGGUgCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 29189 0.66 0.709197
Target:  5'- cGCC-CU-CGCCGCGGCgccCGCG-CgGGCg -3'
miRNA:   3'- -CGGuGAgGUGGCGCCG---GUGCaGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 129586 0.66 0.709197
Target:  5'- gGCCGCg-CGCCGCGGgaCACG--CGGCa -3'
miRNA:   3'- -CGGUGagGUGGCGCCg-GUGCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 92560 0.66 0.709197
Target:  5'- cCCGCgcgcgCC-CCGCGcGCCGCGcgcCCAcGCg -3'
miRNA:   3'- cGGUGa----GGuGGCGC-CGGUGCa--GGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 77647 0.66 0.709197
Target:  5'- cGCCA--UCGCCGaCGGCCGgCG-CCuGCa -3'
miRNA:   3'- -CGGUgaGGUGGC-GCCGGU-GCaGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 73142 0.66 0.709197
Target:  5'- gGCCggGCUCgCGCCGCcaGGCgGCGUuguugcUCGGCc -3'
miRNA:   3'- -CGG--UGAG-GUGGCG--CCGgUGCA------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 62116 0.66 0.709197
Target:  5'- gGCCACgCCGucCUGCaGGCCcuGCGU-CAGCa -3'
miRNA:   3'- -CGGUGaGGU--GGCG-CCGG--UGCAgGUCG- -5'
23590 5' -60.4 NC_005261.1 + 31027 0.66 0.709197
Target:  5'- gGCCAaaagCCGgCGCGccGCCGgGUCCccAGCg -3'
miRNA:   3'- -CGGUga--GGUgGCGC--CGGUgCAGG--UCG- -5'
23590 5' -60.4 NC_005261.1 + 123472 0.66 0.707256
Target:  5'- gGCCucccagaACUCCACCagggacaccggGCGcaccagcggcaguGCCGCGUCCgcuAGCa -3'
miRNA:   3'- -CGG-------UGAGGUGG-----------CGC-------------CGGUGCAGG---UCG- -5'
23590 5' -60.4 NC_005261.1 + 32154 0.66 0.706285
Target:  5'- cGgCGCgCCGCUGCGGCCgguguaccuggccuGCGggCGGCg -3'
miRNA:   3'- -CgGUGaGGUGGCGCCGG--------------UGCagGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.