miRNA display CGI


Results 21 - 40 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 101900 0.66 0.718865
Target:  5'- cGCgCGCUCCuCCuCGaaaGCCGCGUgcccCCGGCg -3'
miRNA:   3'- -CG-GUGAGGuGGcGC---CGGUGCA----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 83689 0.66 0.718865
Target:  5'- -gCGCgCCGCCGaGGCgGCGccgcagCCAGCg -3'
miRNA:   3'- cgGUGaGGUGGCgCCGgUGCa-----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 56290 0.66 0.718865
Target:  5'- cGCCGCUguucgCCGCCaCGGCCuccCG-CCuGCu -3'
miRNA:   3'- -CGGUGA-----GGUGGcGCCGGu--GCaGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 16979 0.66 0.718865
Target:  5'- -gCGCcCCACCuGCGGguCCGCGaUCAGCg -3'
miRNA:   3'- cgGUGaGGUGG-CGCC--GGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 121381 0.66 0.718865
Target:  5'- aGgCGCcCCGCgGCGGCgGCG-CCuGCc -3'
miRNA:   3'- -CgGUGaGGUGgCGCCGgUGCaGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 125679 0.66 0.718865
Target:  5'- uGCCGCcgaaugggUuuGCCG-GGCUugGcCCGGCg -3'
miRNA:   3'- -CGGUG--------AggUGGCgCCGGugCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 127327 0.66 0.718865
Target:  5'- uGCCGC-CCGCgGgGGCCG-GagCGGCg -3'
miRNA:   3'- -CGGUGaGGUGgCgCCGGUgCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 10909 0.66 0.718865
Target:  5'- gGCgGCagcgCCGCCGcCGGCCGCGacaacccccuUCUcGCg -3'
miRNA:   3'- -CGgUGa---GGUGGC-GCCGGUGC----------AGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 18395 0.66 0.718865
Target:  5'- aGCCGCUgCGgaCGCgGGCCuCGgagaccCCAGCg -3'
miRNA:   3'- -CGGUGAgGUg-GCG-CCGGuGCa-----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 68131 0.66 0.718865
Target:  5'- gGCCGCggCGCgGCGaCCGCGccguggCCGGCu -3'
miRNA:   3'- -CGGUGagGUGgCGCcGGUGCa-----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 70552 0.66 0.718865
Target:  5'- cCCAC-CCGCCGCagggcGCCGCGaagagcUCgGGCg -3'
miRNA:   3'- cGGUGaGGUGGCGc----CGGUGC------AGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 74954 0.66 0.718865
Target:  5'- gGCgCGCUCgGCgCGCucgaGGCCGCGcgCCcGCg -3'
miRNA:   3'- -CG-GUGAGgUG-GCG----CCGGUGCa-GGuCG- -5'
23590 5' -60.4 NC_005261.1 + 106374 0.66 0.718865
Target:  5'- cGCCGCcgUCGCCGuuGCCGCcgcugUCGGCg -3'
miRNA:   3'- -CGGUGa-GGUGGCgcCGGUGca---GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 67786 0.66 0.717901
Target:  5'- gGCCGCccccuccUCCGCCuCGGCgC-CGcCCAGUg -3'
miRNA:   3'- -CGGUG-------AGGUGGcGCCG-GuGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 50811 0.66 0.717901
Target:  5'- cGCCaugacggGCUCCG-CGCGGCUugGcgCC-GCg -3'
miRNA:   3'- -CGG-------UGAGGUgGCGCCGGugCa-GGuCG- -5'
23590 5' -60.4 NC_005261.1 + 62338 0.66 0.716937
Target:  5'- cGCC--UCCACCGCGcgcGCCACcacgcgcgccaCCAGCu -3'
miRNA:   3'- -CGGugAGGUGGCGC---CGGUGca---------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 106791 0.66 0.715971
Target:  5'- cGCCGuCUgCGCCcgcaccagcgccgaGUGGCC-CG-CCAGCa -3'
miRNA:   3'- -CGGU-GAgGUGG--------------CGCCGGuGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 67955 0.66 0.710167
Target:  5'- cGCuCGCgcggCCGCCGCGGCgAUGgaguucgcuuaccgCAGCg -3'
miRNA:   3'- -CG-GUGa---GGUGGCGCCGgUGCag------------GUCG- -5'
23590 5' -60.4 NC_005261.1 + 86468 0.66 0.709197
Target:  5'- cCCGCgCCGuugauggaCGCGGCCGgG-CCGGCg -3'
miRNA:   3'- cGGUGaGGUg-------GCGCCGGUgCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 29189 0.66 0.709197
Target:  5'- cGCC-CU-CGCCGCGGCgccCGCG-CgGGCg -3'
miRNA:   3'- -CGGuGAgGUGGCGCCG---GUGCaGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.