miRNA display CGI


Results 1 - 20 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 639 0.71 0.448835
Target:  5'- gGCgGCggCCGCCaGC-GCCGCGUCCccGGCg -3'
miRNA:   3'- -CGgUGa-GGUGG-CGcCGGUGCAGG--UCG- -5'
23590 5' -60.4 NC_005261.1 + 1171 0.69 0.541784
Target:  5'- cGCCgGCcCgCGCCGCGGCCGgGgCCGGg -3'
miRNA:   3'- -CGG-UGaG-GUGGCGCCGGUgCaGGUCg -5'
23590 5' -60.4 NC_005261.1 + 1324 0.67 0.650187
Target:  5'- -gCGCUCCgggacGCCGcCGcGCCGCGccugcaCCAGCg -3'
miRNA:   3'- cgGUGAGG-----UGGC-GC-CGGUGCa-----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 1390 0.8 0.12619
Target:  5'- gGCCACgCCgggcGCCGCGGCCGCGg-CGGCg -3'
miRNA:   3'- -CGGUGaGG----UGGCGCCGGUGCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 1431 0.68 0.577862
Target:  5'- cGCCcgcCUCCagcACCaGCGGCgGCGccucggcgugcggcUCCAGCa -3'
miRNA:   3'- -CGGu--GAGG---UGG-CGCCGgUGC--------------AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 1495 0.77 0.183118
Target:  5'- gGCCA--CCGCCGCGGCCGgcagcuCGUCgGGCg -3'
miRNA:   3'- -CGGUgaGGUGGCGCCGGU------GCAGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 1525 0.71 0.422681
Target:  5'- cGCCAgCUCCAgcgcgcgccgcCCGCaGGCCAgGUacaCCGGCc -3'
miRNA:   3'- -CGGU-GAGGU-----------GGCG-CCGGUgCA---GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 1654 0.81 0.10565
Target:  5'- cGCCGCgCuCugCGCGGCCAUGUCCuuGCg -3'
miRNA:   3'- -CGGUGaG-GugGCGCCGGUGCAGGu-CG- -5'
23590 5' -60.4 NC_005261.1 + 1785 0.67 0.650187
Target:  5'- cGCCGCggcagagCCGCaGCGGCgGCGccCCGGg -3'
miRNA:   3'- -CGGUGa------GGUGgCGCCGgUGCa-GGUCg -5'
23590 5' -60.4 NC_005261.1 + 1874 0.72 0.397465
Target:  5'- cGCCGCgaggCCAgCaCGGCgCGCG-CCAGCg -3'
miRNA:   3'- -CGGUGa---GGUgGcGCCG-GUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 1907 0.68 0.600558
Target:  5'- cGCCGCUcaggCCAgCGCGcggcgcacugcGCCGCGggCAGCa -3'
miRNA:   3'- -CGGUGA----GGUgGCGC-----------CGGUGCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 2035 0.74 0.293278
Target:  5'- aGCCg--CCGCCGC-GCCGCGgCCAGCc -3'
miRNA:   3'- -CGGugaGGUGGCGcCGGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 2068 0.69 0.532156
Target:  5'- aGgUACUCgACCGCgccgcggaaGGCCAgGUCCcGCg -3'
miRNA:   3'- -CgGUGAGgUGGCG---------CCGGUgCAGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 2116 0.72 0.389277
Target:  5'- aGCaCGC-CCugCGCGccgagcgcGCuCACGUCCGGCg -3'
miRNA:   3'- -CG-GUGaGGugGCGC--------CG-GUGCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 2237 0.74 0.280262
Target:  5'- cGCCGCg-CACCgGCGGCCACucaggccgCCGGCg -3'
miRNA:   3'- -CGGUGagGUGG-CGCCGGUGca------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 2370 0.75 0.267708
Target:  5'- gGCCACgcgCCGCCGCaGCgGCGcgCUGGCg -3'
miRNA:   3'- -CGGUGa--GGUGGCGcCGgUGCa-GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 2410 0.67 0.650187
Target:  5'- cCCGCgggCC-CCGCgcggcggcgGGCCGCGaucucggCCAGCg -3'
miRNA:   3'- cGGUGa--GGuGGCG---------CCGGUGCa------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 2541 0.7 0.475858
Target:  5'- gGCCGCcagCGCCGCGGCgCugGgcgCgGGCg -3'
miRNA:   3'- -CGGUGag-GUGGCGCCG-GugCa--GgUCG- -5'
23590 5' -60.4 NC_005261.1 + 2594 0.67 0.679859
Target:  5'- cGCgGCggaagCCGCCGuCGGCgGCGgggccgCCGGg -3'
miRNA:   3'- -CGgUGa----GGUGGC-GCCGgUGCa-----GGUCg -5'
23590 5' -60.4 NC_005261.1 + 2662 0.7 0.503666
Target:  5'- gGCgGCUcCCGCCGCgcuggggacccGGCgGCGcgCCGGCu -3'
miRNA:   3'- -CGgUGA-GGUGGCG-----------CCGgUGCa-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.