miRNA display CGI


Results 1 - 20 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 101353 1.12 0.000642
Target:  5'- aGCCACUCCACCGCGGCCACGUCCAGCu -3'
miRNA:   3'- -CGGUGAGGUGGCGCCGGUGCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 82797 0.88 0.03528
Target:  5'- cGCCAgCUCCGCCGCGGCCACcUgCAGCc -3'
miRNA:   3'- -CGGU-GAGGUGGCGCCGGUGcAgGUCG- -5'
23590 5' -60.4 NC_005261.1 + 32304 0.87 0.040276
Target:  5'- cGCCGCccccgccgCCGCCGCGGCCGCGgcgcCCGGCg -3'
miRNA:   3'- -CGGUGa-------GGUGGCGCCGGUGCa---GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 107296 0.87 0.041356
Target:  5'- aGgCACUCCGCCGCGGCCACGgCCGccGCg -3'
miRNA:   3'- -CgGUGAGGUGGCGCCGGUGCaGGU--CG- -5'
23590 5' -60.4 NC_005261.1 + 127820 0.86 0.0436
Target:  5'- gGCCGCUCgCGCuCGCGGCCGCGagCAGCg -3'
miRNA:   3'- -CGGUGAG-GUG-GCGCCGGUGCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 120243 0.86 0.049744
Target:  5'- cGCCGCUUCGCCGCGgcuGCCACG-CCGGCc -3'
miRNA:   3'- -CGGUGAGGUGGCGC---CGGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 101625 0.84 0.067063
Target:  5'- cGCCuCUCgCGCCGCGGCCGCGUCgcgccgcaccgugcuCAGCa -3'
miRNA:   3'- -CGGuGAG-GUGGCGCCGGUGCAG---------------GUCG- -5'
23590 5' -60.4 NC_005261.1 + 87055 0.83 0.073652
Target:  5'- cGCaCACgcagcgCCACCGCGGCCGgGcCCAGCa -3'
miRNA:   3'- -CG-GUGa-----GGUGGCGCCGGUgCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 106537 0.83 0.07559
Target:  5'- cGCCucCUCgGCgGCGGCCGCGUCCGGg -3'
miRNA:   3'- -CGGu-GAGgUGgCGCCGGUGCAGGUCg -5'
23590 5' -60.4 NC_005261.1 + 123001 0.83 0.077577
Target:  5'- gGCCACUaCgGCCGCGGCCgugGCGUCCgcgAGCg -3'
miRNA:   3'- -CGGUGA-GgUGGCGCCGG---UGCAGG---UCG- -5'
23590 5' -60.4 NC_005261.1 + 102310 0.82 0.08086
Target:  5'- aGCCGCg-CGCCGCGGCCGCGgcgcgcagccgcgCCAGCu -3'
miRNA:   3'- -CGGUGagGUGGCGCCGGUGCa------------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 3494 0.82 0.086035
Target:  5'- gGCCACgguucgcgccgCCAgCGCGGCCGCcUCCAGCg -3'
miRNA:   3'- -CGGUGa----------GGUgGCGCCGGUGcAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 72779 0.82 0.088056
Target:  5'- gGCCGCgcacgcgUCCgggGCCGCGGaCACGUCCAGCa -3'
miRNA:   3'- -CGGUG-------AGG---UGGCGCCgGUGCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 4918 0.82 0.090587
Target:  5'- gGCUGcCUCCGCCGCGGCCGCGagcgCCcGCg -3'
miRNA:   3'- -CGGU-GAGGUGGCGCCGGUGCa---GGuCG- -5'
23590 5' -60.4 NC_005261.1 + 1654 0.81 0.10565
Target:  5'- cGCCGCgCuCugCGCGGCCAUGUCCuuGCg -3'
miRNA:   3'- -CGGUGaG-GugGCGCCGGUGCAGGu-CG- -5'
23590 5' -60.4 NC_005261.1 + 83594 0.81 0.108103
Target:  5'- cGCCAgcagcgcgucgcuCUCCGCCGCGGCgugGUCCAGCg -3'
miRNA:   3'- -CGGU-------------GAGGUGGCGCCGgugCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 103385 0.8 0.111175
Target:  5'- cGCCGC-CgCGCCGCGGCCGCcugcgccUCCAGCu -3'
miRNA:   3'- -CGGUGaG-GUGGCGCCGGUGc------AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 100711 0.8 0.111175
Target:  5'- cGCCGC-CCgaGCCGCGGCCGCG-CCGcGCg -3'
miRNA:   3'- -CGGUGaGG--UGGCGCCGGUGCaGGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 78033 0.8 0.119667
Target:  5'- cGCCGCUCCGCCccagccgGUGGUCGCGggcCCGGCc -3'
miRNA:   3'- -CGGUGAGGUGG-------CGCCGGUGCa--GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 3581 0.8 0.119971
Target:  5'- cGCgCGCUCCACCGCgucgcgGGCCGCG-CCAaGCa -3'
miRNA:   3'- -CG-GUGAGGUGGCG------CCGGUGCaGGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.