miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23592 5' -59.7 NC_005261.1 + 96675 1.09 0.001033
Target:  5'- aCGCUGAUGCCCGUGCCGCGCAGGUACu -3'
miRNA:   3'- -GCGACUACGGGCACGGCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 75815 0.84 0.065285
Target:  5'- aCGCUGGUGCCCGgcgcgGCCGCGCccGGGgagggGCg -3'
miRNA:   3'- -GCGACUACGGGCa----CGGCGCG--UCCa----UG- -5'
23592 5' -59.7 NC_005261.1 + 31994 0.78 0.170326
Target:  5'- cCGC-GGUGCCCGUGCCGcCGCGcGaGUACc -3'
miRNA:   3'- -GCGaCUACGGGCACGGC-GCGU-C-CAUG- -5'
23592 5' -59.7 NC_005261.1 + 50102 0.75 0.234286
Target:  5'- aCGC---UGCCCGcGCCGCGCAGGgcCg -3'
miRNA:   3'- -GCGacuACGGGCaCGGCGCGUCCauG- -5'
23592 5' -59.7 NC_005261.1 + 51793 0.75 0.245754
Target:  5'- uGCUGGccguggccaUGCUCGUGCUGCGgCuGGUGCg -3'
miRNA:   3'- gCGACU---------ACGGGCACGGCGC-GuCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 100598 0.75 0.245754
Target:  5'- aGCgcc-GCCaCGcgGCCGCGCAGGUGCa -3'
miRNA:   3'- gCGacuaCGG-GCa-CGGCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 45691 0.75 0.257684
Target:  5'- uGCUGAacggGCCCcucGCCGCGCAGGg-- -3'
miRNA:   3'- gCGACUa---CGGGca-CGGCGCGUCCaug -5'
23592 5' -59.7 NC_005261.1 + 31283 0.73 0.310156
Target:  5'- gCGCUGGccgagaucgcgGCCCGccGCCGCGCGGGgcccGCg -3'
miRNA:   3'- -GCGACUa----------CGGGCa-CGGCGCGUCCa---UG- -5'
23592 5' -59.7 NC_005261.1 + 134562 0.73 0.339298
Target:  5'- uGCUGGgcgGCgCCGcgGCUGCGCAGGgcggGCc -3'
miRNA:   3'- gCGACUa--CG-GGCa-CGGCGCGUCCa---UG- -5'
23592 5' -59.7 NC_005261.1 + 132648 0.72 0.362427
Target:  5'- gCGCgGcgGCCCuagcgGCCGCGUguGGGUGCg -3'
miRNA:   3'- -GCGaCuaCGGGca---CGGCGCG--UCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 66551 0.72 0.370377
Target:  5'- aGCUGGUcGgCCGUGCCGCGCucGaACg -3'
miRNA:   3'- gCGACUA-CgGGCACGGCGCGucCaUG- -5'
23592 5' -59.7 NC_005261.1 + 89090 0.72 0.386629
Target:  5'- gGCUGcgGCCCG-GgCGCGCuGGcGCg -3'
miRNA:   3'- gCGACuaCGGGCaCgGCGCGuCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 74893 0.72 0.39493
Target:  5'- gGCggagucgGcgGCCCGcgcugGCCGCGCGGGggaggGCg -3'
miRNA:   3'- gCGa------CuaCGGGCa----CGGCGCGUCCa----UG- -5'
23592 5' -59.7 NC_005261.1 + 77062 0.71 0.403345
Target:  5'- cCGCgccugGCCgGUGCCGCGCgAGGcGCu -3'
miRNA:   3'- -GCGacua-CGGgCACGGCGCG-UCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 135743 0.71 0.411872
Target:  5'- uGCUGGcgcGCCUcaGCCGCGC-GGUGCg -3'
miRNA:   3'- gCGACUa--CGGGcaCGGCGCGuCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 117936 0.71 0.420511
Target:  5'- gGCUGcgGCCCGUGC-GCGCucgcugcuacGGGcGCg -3'
miRNA:   3'- gCGACuaCGGGCACGgCGCG----------UCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 43442 0.71 0.438111
Target:  5'- aGCUGGcucggcGCCUGgacgucGCCGgGCGGGUGCu -3'
miRNA:   3'- gCGACUa-----CGGGCa-----CGGCgCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 2200 0.71 0.447068
Target:  5'- aGCcGGuUGCCCaGcGCCGCgaGCAGGUGCg -3'
miRNA:   3'- gCGaCU-ACGGG-CaCGGCG--CGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 43631 0.71 0.447068
Target:  5'- uGCUGugggcGCCCGUGUgGCGCGGcGgugACg -3'
miRNA:   3'- gCGACua---CGGGCACGgCGCGUC-Ca--UG- -5'
23592 5' -59.7 NC_005261.1 + 101785 0.7 0.456125
Target:  5'- gCGCgUGccGCCCGgcgggGCUGCGCAcGUACg -3'
miRNA:   3'- -GCG-ACuaCGGGCa----CGGCGCGUcCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.