miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23592 5' -59.7 NC_005261.1 + 1938 0.68 0.571341
Target:  5'- cCGCgGGcaGCaCCGcGgCGCGCAGGUACa -3'
miRNA:   3'- -GCGaCUa-CG-GGCaCgGCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 2200 0.71 0.447068
Target:  5'- aGCcGGuUGCCCaGcGCCGCgaGCAGGUGCg -3'
miRNA:   3'- gCGaCU-ACGGG-CaCGGCG--CGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 3615 0.67 0.63176
Target:  5'- aGCUcaGcUGCCCGgaGCaCGCGCuccGGGUGCg -3'
miRNA:   3'- gCGA--CuACGGGCa-CG-GCGCG---UCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 12123 0.66 0.721824
Target:  5'- gCGCcagGAUggcGCCCGccgccgcggcgGCCGCGCAGGc-- -3'
miRNA:   3'- -GCGa--CUA---CGGGCa----------CGGCGCGUCCaug -5'
23592 5' -59.7 NC_005261.1 + 13643 0.66 0.692167
Target:  5'- aCGCgGAagcgcGCgCCGUGCCGCcgccGCGGGggggGCg -3'
miRNA:   3'- -GCGaCUa----CG-GGCACGGCG----CGUCCa---UG- -5'
23592 5' -59.7 NC_005261.1 + 13943 0.69 0.541606
Target:  5'- gCGUUGcgGCCCa-GCCGCGCGGaaACg -3'
miRNA:   3'- -GCGACuaCGGGcaCGGCGCGUCcaUG- -5'
23592 5' -59.7 NC_005261.1 + 14767 0.7 0.502813
Target:  5'- cCGCgacagGggGgCCGccCCGCGCAGGUGCc -3'
miRNA:   3'- -GCGa----CuaCgGGCacGGCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 19249 0.66 0.73157
Target:  5'- uGCgGggGCgCUGaacaGCgCGCGCGGGUACg -3'
miRNA:   3'- gCGaCuaCG-GGCa---CG-GCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 19403 0.66 0.721824
Target:  5'- uCGgUGAUcgGCCCGUguGCCGCGCcgaagucgcccAGGcACa -3'
miRNA:   3'- -GCgACUA--CGGGCA--CGGCGCG-----------UCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 20571 0.68 0.591383
Target:  5'- gCGCaGcgGCgCCG-GCgGCGCGGGUGg -3'
miRNA:   3'- -GCGaCuaCG-GGCaCGgCGCGUCCAUg -5'
23592 5' -59.7 NC_005261.1 + 20727 0.66 0.720845
Target:  5'- gCGCUGggGCUCG-GCCGUuucacguGUGGGUGu -3'
miRNA:   3'- -GCGACuaCGGGCaCGGCG-------CGUCCAUg -5'
23592 5' -59.7 NC_005261.1 + 23202 0.69 0.551466
Target:  5'- cCGC-GggGCCCGcagcggcgGCCGCGCGcaaaagccGGUGCa -3'
miRNA:   3'- -GCGaCuaCGGGCa-------CGGCGCGU--------CCAUG- -5'
23592 5' -59.7 NC_005261.1 + 29426 0.66 0.73157
Target:  5'- cCGC-GggGCCCGcgGCCGUGUucGUGCc -3'
miRNA:   3'- -GCGaCuaCGGGCa-CGGCGCGucCAUG- -5'
23592 5' -59.7 NC_005261.1 + 29641 0.66 0.720845
Target:  5'- cCGCUGccGCCgGUcggggacgccaugGCCGCGCAGa--- -3'
miRNA:   3'- -GCGACuaCGGgCA-------------CGGCGCGUCcaug -5'
23592 5' -59.7 NC_005261.1 + 29843 0.67 0.641874
Target:  5'- aGCUGcgcgccGUGCUCGccgGCCGCGCGGcGccgGCg -3'
miRNA:   3'- gCGAC------UACGGGCa--CGGCGCGUC-Ca--UG- -5'
23592 5' -59.7 NC_005261.1 + 29944 0.66 0.721824
Target:  5'- gCGCUGcgGCC--UGCCGCG-AGGcGCu -3'
miRNA:   3'- -GCGACuaCGGgcACGGCGCgUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 30774 0.66 0.692167
Target:  5'- gGCcGGaGCCCG-GCCGCgGCgguggAGGUGCu -3'
miRNA:   3'- gCGaCUaCGGGCaCGGCG-CG-----UCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 31283 0.73 0.310156
Target:  5'- gCGCUGGccgagaucgcgGCCCGccGCCGCGCGGGgcccGCg -3'
miRNA:   3'- -GCGACUa----------CGGGCa-CGGCGCGUCCa---UG- -5'
23592 5' -59.7 NC_005261.1 + 31738 0.68 0.611542
Target:  5'- gCGC-GAUgGCCCG-GCCGUcggGCAGGcGCa -3'
miRNA:   3'- -GCGaCUA-CGGGCaCGGCG---CGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 31994 0.78 0.170326
Target:  5'- cCGC-GGUGCCCGUGCCGcCGCGcGaGUACc -3'
miRNA:   3'- -GCGaCUACGGGCACGGC-GCGU-C-CAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.