miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23592 5' -59.7 NC_005261.1 + 36947 0.68 0.581344
Target:  5'- gCGCUGGcgcaagGCCC--GCCGCGCGgcgcagagcucGGUGCg -3'
miRNA:   3'- -GCGACUa-----CGGGcaCGGCGCGU-----------CCAUG- -5'
23592 5' -59.7 NC_005261.1 + 36995 0.7 0.502813
Target:  5'- aGCcGGaGCCCGcggGCUGCGCGGGgcCa -3'
miRNA:   3'- gCGaCUaCGGGCa--CGGCGCGUCCauG- -5'
23592 5' -59.7 NC_005261.1 + 37366 0.68 0.581344
Target:  5'- uGCUcGccGCCCGagGCgGCGCuguGGUACg -3'
miRNA:   3'- gCGA-CuaCGGGCa-CGgCGCGu--CCAUG- -5'
23592 5' -59.7 NC_005261.1 + 38282 0.67 0.65097
Target:  5'- gGCUGGUGCacgCgGUGCuggcccgccugagCGCGCAGGgcgGCc -3'
miRNA:   3'- gCGACUACG---GgCACG-------------GCGCGUCCa--UG- -5'
23592 5' -59.7 NC_005261.1 + 38595 0.7 0.502813
Target:  5'- uGCUGGcgGCCCGcgGCUG-GCGGGUGu -3'
miRNA:   3'- gCGACUa-CGGGCa-CGGCgCGUCCAUg -5'
23592 5' -59.7 NC_005261.1 + 42354 0.67 0.66207
Target:  5'- uGCUGGgcgGgCUG-GCCGCGCAaacguacuGGUGCc -3'
miRNA:   3'- gCGACUa--CgGGCaCGGCGCGU--------CCAUG- -5'
23592 5' -59.7 NC_005261.1 + 42561 0.67 0.672137
Target:  5'- uGCUcuUGCCCGaGcCCGCGUuccccgugauaAGGUACg -3'
miRNA:   3'- gCGAcuACGGGCaC-GGCGCG-----------UCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 43442 0.71 0.438111
Target:  5'- aGCUGGcucggcGCCUGgacgucGCCGgGCGGGUGCu -3'
miRNA:   3'- gCGACUa-----CGGGCa-----CGGCgCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 43631 0.71 0.447068
Target:  5'- uGCUGugggcGCCCGUGUgGCGCGGcGgugACg -3'
miRNA:   3'- gCGACua---CGGGCACGgCGCGUC-Ca--UG- -5'
23592 5' -59.7 NC_005261.1 + 44975 0.7 0.483873
Target:  5'- gCGCgaggGCCCGggcggGCCGCcaCAGGUGCu -3'
miRNA:   3'- -GCGacuaCGGGCa----CGGCGc-GUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 45136 0.69 0.551466
Target:  5'- uGCUGAcGCUCGacgGCCGCGCcgAGGa-- -3'
miRNA:   3'- gCGACUaCGGGCa--CGGCGCG--UCCaug -5'
23592 5' -59.7 NC_005261.1 + 45550 0.69 0.561379
Target:  5'- aCGCUGuUGCCCG-GCUGCuGCuGGcgGCc -3'
miRNA:   3'- -GCGACuACGGGCaCGGCG-CGuCCa-UG- -5'
23592 5' -59.7 NC_005261.1 + 45691 0.75 0.257684
Target:  5'- uGCUGAacggGCCCcucGCCGCGCAGGg-- -3'
miRNA:   3'- gCGACUa---CGGGca-CGGCGCGUCCaug -5'
23592 5' -59.7 NC_005261.1 + 46457 0.66 0.721824
Target:  5'- uGCgUGAacagGCCCucGaaGCGCAGGUGCa -3'
miRNA:   3'- gCG-ACUa---CGGGcaCggCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 50021 0.7 0.493301
Target:  5'- gCGCgGgcGCCCagccGCCGCGCGacGGUGCa -3'
miRNA:   3'- -GCGaCuaCGGGca--CGGCGCGU--CCAUG- -5'
23592 5' -59.7 NC_005261.1 + 50059 0.7 0.493301
Target:  5'- cCGCgaGAaGCCCGcUGCCGCGUAGucGCa -3'
miRNA:   3'- -GCGa-CUaCGGGC-ACGGCGCGUCcaUG- -5'
23592 5' -59.7 NC_005261.1 + 50102 0.75 0.234286
Target:  5'- aCGC---UGCCCGcGCCGCGCAGGgcCg -3'
miRNA:   3'- -GCGacuACGGGCaCGGCGCGUCCauG- -5'
23592 5' -59.7 NC_005261.1 + 50845 0.67 0.641874
Target:  5'- aGCUGgcGCCUGUgGCuCGCcCAGGUcgGCg -3'
miRNA:   3'- gCGACuaCGGGCA-CG-GCGcGUCCA--UG- -5'
23592 5' -59.7 NC_005261.1 + 51355 0.67 0.641874
Target:  5'- cCGCUGGgcUGUCCGgcgcgGaguaCGCGCAGGccgUGCg -3'
miRNA:   3'- -GCGACU--ACGGGCa----Cg---GCGCGUCC---AUG- -5'
23592 5' -59.7 NC_005261.1 + 51793 0.75 0.245754
Target:  5'- uGCUGGccguggccaUGCUCGUGCUGCGgCuGGUGCg -3'
miRNA:   3'- gCGACU---------ACGGGCACGGCGC-GuCCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.