Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23592 | 5' | -59.7 | NC_005261.1 | + | 64481 | 0.69 | 0.551466 |
Target: 5'- uCGCcgGGUGCagCGgGUgGCGCGGGUGCu -3' miRNA: 3'- -GCGa-CUACGg-GCaCGgCGCGUCCAUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 130325 | 0.68 | 0.581344 |
Target: 5'- gCGCcaugGAcgGCCCG-GCCGCGCucGGGgACg -3' miRNA: 3'- -GCGa---CUa-CGGGCaCGGCGCG--UCCaUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 120968 | 0.68 | 0.581344 |
Target: 5'- cCGC-GggGCgCGUGCCGCcGCAGGc-- -3' miRNA: 3'- -GCGaCuaCGgGCACGGCG-CGUCCaug -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 37366 | 0.68 | 0.581344 |
Target: 5'- uGCUcGccGCCCGagGCgGCGCuguGGUACg -3' miRNA: 3'- gCGA-CuaCGGGCa-CGgCGCGu--CCAUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 36947 | 0.68 | 0.581344 |
Target: 5'- gCGCUGGcgcaagGCCC--GCCGCGCGgcgcagagcucGGUGCg -3' miRNA: 3'- -GCGACUa-----CGGGcaCGGCGCGU-----------CCAUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 1938 | 0.68 | 0.571341 |
Target: 5'- cCGCgGGcaGCaCCGcGgCGCGCAGGUACa -3' miRNA: 3'- -GCGaCUa-CG-GGCaCgGCGCGUCCAUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 81821 | 0.68 | 0.571341 |
Target: 5'- gCGgUGAcGcCCCGcGCCGCGCGGaUGCg -3' miRNA: 3'- -GCgACUaC-GGGCaCGGCGCGUCcAUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 71793 | 0.68 | 0.571341 |
Target: 5'- aGCUGAgcgcgGCCCG-GCC-CGUGGGgACg -3' miRNA: 3'- gCGACUa----CGGGCaCGGcGCGUCCaUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 62810 | 0.68 | 0.571341 |
Target: 5'- gGCUGG-GCCauaucGCCGCGCGGGgcaccgGCg -3' miRNA: 3'- gCGACUaCGGgca--CGGCGCGUCCa-----UG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 45550 | 0.69 | 0.561379 |
Target: 5'- aCGCUGuUGCCCG-GCUGCuGCuGGcgGCc -3' miRNA: 3'- -GCGACuACGGGCaCGGCG-CGuCCa-UG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 59062 | 0.7 | 0.465281 |
Target: 5'- gCGC-GcgGCCgCGgagaGCgCGCGCGGGUGCg -3' miRNA: 3'- -GCGaCuaCGG-GCa---CG-GCGCGUCCAUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 23202 | 0.69 | 0.551466 |
Target: 5'- cCGC-GggGCCCGcagcggcgGCCGCGCGcaaaagccGGUGCa -3' miRNA: 3'- -GCGaCuaCGGGCa-------CGGCGCGU--------CCAUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 45136 | 0.69 | 0.551466 |
Target: 5'- uGCUGAcGCUCGacgGCCGCGCcgAGGa-- -3' miRNA: 3'- gCGACUaCGGGCa--CGGCGCG--UCCaug -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 13943 | 0.69 | 0.541606 |
Target: 5'- gCGUUGcgGCCCa-GCCGCGCGGaaACg -3' miRNA: 3'- -GCGACuaCGGGcaCGGCGCGUCcaUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 88467 | 0.69 | 0.512404 |
Target: 5'- gCGUguggGcgGgCCGUGCCGCGCcGGaGCg -3' miRNA: 3'- -GCGa---CuaCgGGCACGGCGCGuCCaUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 14767 | 0.7 | 0.502813 |
Target: 5'- cCGCgacagGggGgCCGccCCGCGCAGGUGCc -3' miRNA: 3'- -GCGa----CuaCgGGCacGGCGCGUCCAUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 38595 | 0.7 | 0.502813 |
Target: 5'- uGCUGGcgGCCCGcgGCUG-GCGGGUGu -3' miRNA: 3'- gCGACUa-CGGGCa-CGGCgCGUCCAUg -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 36995 | 0.7 | 0.502813 |
Target: 5'- aGCcGGaGCCCGcggGCUGCGCGGGgcCa -3' miRNA: 3'- gCGaCUaCGGGCa--CGGCGCGUCCauG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 50059 | 0.7 | 0.493301 |
Target: 5'- cCGCgaGAaGCCCGcUGCCGCGUAGucGCa -3' miRNA: 3'- -GCGa-CUaCGGGC-ACGGCGCGUCcaUG- -5' |
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23592 | 5' | -59.7 | NC_005261.1 | + | 120415 | 0.7 | 0.493301 |
Target: 5'- gCGCUGAgcgGCCUGgGCUggugaacauGCGCGGcGUGCg -3' miRNA: 3'- -GCGACUa--CGGGCaCGG---------CGCGUC-CAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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