miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23592 5' -59.7 NC_005261.1 + 64481 0.69 0.551466
Target:  5'- uCGCcgGGUGCagCGgGUgGCGCGGGUGCu -3'
miRNA:   3'- -GCGa-CUACGg-GCaCGgCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 130325 0.68 0.581344
Target:  5'- gCGCcaugGAcgGCCCG-GCCGCGCucGGGgACg -3'
miRNA:   3'- -GCGa---CUa-CGGGCaCGGCGCG--UCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 120968 0.68 0.581344
Target:  5'- cCGC-GggGCgCGUGCCGCcGCAGGc-- -3'
miRNA:   3'- -GCGaCuaCGgGCACGGCG-CGUCCaug -5'
23592 5' -59.7 NC_005261.1 + 37366 0.68 0.581344
Target:  5'- uGCUcGccGCCCGagGCgGCGCuguGGUACg -3'
miRNA:   3'- gCGA-CuaCGGGCa-CGgCGCGu--CCAUG- -5'
23592 5' -59.7 NC_005261.1 + 36947 0.68 0.581344
Target:  5'- gCGCUGGcgcaagGCCC--GCCGCGCGgcgcagagcucGGUGCg -3'
miRNA:   3'- -GCGACUa-----CGGGcaCGGCGCGU-----------CCAUG- -5'
23592 5' -59.7 NC_005261.1 + 1938 0.68 0.571341
Target:  5'- cCGCgGGcaGCaCCGcGgCGCGCAGGUACa -3'
miRNA:   3'- -GCGaCUa-CG-GGCaCgGCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 81821 0.68 0.571341
Target:  5'- gCGgUGAcGcCCCGcGCCGCGCGGaUGCg -3'
miRNA:   3'- -GCgACUaC-GGGCaCGGCGCGUCcAUG- -5'
23592 5' -59.7 NC_005261.1 + 71793 0.68 0.571341
Target:  5'- aGCUGAgcgcgGCCCG-GCC-CGUGGGgACg -3'
miRNA:   3'- gCGACUa----CGGGCaCGGcGCGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 62810 0.68 0.571341
Target:  5'- gGCUGG-GCCauaucGCCGCGCGGGgcaccgGCg -3'
miRNA:   3'- gCGACUaCGGgca--CGGCGCGUCCa-----UG- -5'
23592 5' -59.7 NC_005261.1 + 45550 0.69 0.561379
Target:  5'- aCGCUGuUGCCCG-GCUGCuGCuGGcgGCc -3'
miRNA:   3'- -GCGACuACGGGCaCGGCG-CGuCCa-UG- -5'
23592 5' -59.7 NC_005261.1 + 59062 0.7 0.465281
Target:  5'- gCGC-GcgGCCgCGgagaGCgCGCGCGGGUGCg -3'
miRNA:   3'- -GCGaCuaCGG-GCa---CG-GCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 23202 0.69 0.551466
Target:  5'- cCGC-GggGCCCGcagcggcgGCCGCGCGcaaaagccGGUGCa -3'
miRNA:   3'- -GCGaCuaCGGGCa-------CGGCGCGU--------CCAUG- -5'
23592 5' -59.7 NC_005261.1 + 45136 0.69 0.551466
Target:  5'- uGCUGAcGCUCGacgGCCGCGCcgAGGa-- -3'
miRNA:   3'- gCGACUaCGGGCa--CGGCGCG--UCCaug -5'
23592 5' -59.7 NC_005261.1 + 13943 0.69 0.541606
Target:  5'- gCGUUGcgGCCCa-GCCGCGCGGaaACg -3'
miRNA:   3'- -GCGACuaCGGGcaCGGCGCGUCcaUG- -5'
23592 5' -59.7 NC_005261.1 + 88467 0.69 0.512404
Target:  5'- gCGUguggGcgGgCCGUGCCGCGCcGGaGCg -3'
miRNA:   3'- -GCGa---CuaCgGGCACGGCGCGuCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 14767 0.7 0.502813
Target:  5'- cCGCgacagGggGgCCGccCCGCGCAGGUGCc -3'
miRNA:   3'- -GCGa----CuaCgGGCacGGCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 38595 0.7 0.502813
Target:  5'- uGCUGGcgGCCCGcgGCUG-GCGGGUGu -3'
miRNA:   3'- gCGACUa-CGGGCa-CGGCgCGUCCAUg -5'
23592 5' -59.7 NC_005261.1 + 36995 0.7 0.502813
Target:  5'- aGCcGGaGCCCGcggGCUGCGCGGGgcCa -3'
miRNA:   3'- gCGaCUaCGGGCa--CGGCGCGUCCauG- -5'
23592 5' -59.7 NC_005261.1 + 50059 0.7 0.493301
Target:  5'- cCGCgaGAaGCCCGcUGCCGCGUAGucGCa -3'
miRNA:   3'- -GCGa-CUaCGGGC-ACGGCGCGUCcaUG- -5'
23592 5' -59.7 NC_005261.1 + 120415 0.7 0.493301
Target:  5'- gCGCUGAgcgGCCUGgGCUggugaacauGCGCGGcGUGCg -3'
miRNA:   3'- -GCGACUa--CGGGCaCGG---------CGCGUC-CAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.