miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23592 5' -59.7 NC_005261.1 + 135743 0.71 0.411872
Target:  5'- uGCUGGcgcGCCUcaGCCGCGC-GGUGCg -3'
miRNA:   3'- gCGACUa--CGGGcaCGGCGCGuCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 134562 0.73 0.339298
Target:  5'- uGCUGGgcgGCgCCGcgGCUGCGCAGGgcggGCc -3'
miRNA:   3'- gCGACUa--CG-GGCa-CGGCGCGUCCa---UG- -5'
23592 5' -59.7 NC_005261.1 + 134335 0.67 0.63176
Target:  5'- uCGCUGcUGuaccgcaagccCCCGcgccGCCGCGCGGGggGCg -3'
miRNA:   3'- -GCGACuAC-----------GGGCa---CGGCGCGUCCa-UG- -5'
23592 5' -59.7 NC_005261.1 + 132648 0.72 0.362427
Target:  5'- gCGCgGcgGCCCuagcgGCCGCGUguGGGUGCg -3'
miRNA:   3'- -GCGaCuaCGGGca---CGGCGCG--UCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 130325 0.68 0.581344
Target:  5'- gCGCcaugGAcgGCCCG-GCCGCGCucGGGgACg -3'
miRNA:   3'- -GCGa---CUa-CGGGCaCGGCGCG--UCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 127315 0.67 0.672137
Target:  5'- gCGgUGggGCCC-UGCCGCccGCGGGgGCc -3'
miRNA:   3'- -GCgACuaCGGGcACGGCG--CGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 125044 0.66 0.692167
Target:  5'- gCGCUGAcucgggcaggGCCUcuaUGgCGCGCAGGUGg -3'
miRNA:   3'- -GCGACUa---------CGGGc--ACgGCGCGUCCAUg -5'
23592 5' -59.7 NC_005261.1 + 120968 0.68 0.581344
Target:  5'- cCGC-GggGCgCGUGCCGCcGCAGGc-- -3'
miRNA:   3'- -GCGaCuaCGgGCACGGCG-CGUCCaug -5'
23592 5' -59.7 NC_005261.1 + 120631 0.7 0.456125
Target:  5'- uGCUGGUggcgGCCCuGUGCCugcggcgcaagGCGCGGGcGCg -3'
miRNA:   3'- gCGACUA----CGGG-CACGG-----------CGCGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 120415 0.7 0.493301
Target:  5'- gCGCUGAgcgGCCUGgGCUggugaacauGCGCGGcGUGCg -3'
miRNA:   3'- -GCGACUa--CGGGCaCGG---------CGCGUC-CAUG- -5'
23592 5' -59.7 NC_005261.1 + 119052 0.67 0.682172
Target:  5'- aCGC----GCCCGcgGCCGCGCGuGUGCu -3'
miRNA:   3'- -GCGacuaCGGGCa-CGGCGCGUcCAUG- -5'
23592 5' -59.7 NC_005261.1 + 118224 0.65 0.738344
Target:  5'- gCGCUGAcgGCCgCG-GCCGCggccuacgccgucuGCGGcGUGCc -3'
miRNA:   3'- -GCGACUa-CGG-GCaCGGCG--------------CGUC-CAUG- -5'
23592 5' -59.7 NC_005261.1 + 118095 0.68 0.591383
Target:  5'- uGCUGGcgGCCC--GCCGCGCAGacgcUGCg -3'
miRNA:   3'- gCGACUa-CGGGcaCGGCGCGUCc---AUG- -5'
23592 5' -59.7 NC_005261.1 + 117936 0.71 0.420511
Target:  5'- gGCUGcgGCCCGUGC-GCGCucgcugcuacGGGcGCg -3'
miRNA:   3'- gCGACuaCGGGCACGgCGCG----------UCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 112689 0.67 0.63176
Target:  5'- gGCUGGgcgucgaGgCCGUGcCCGUGCAGG-ACc -3'
miRNA:   3'- gCGACUa------CgGGCAC-GGCGCGUCCaUG- -5'
23592 5' -59.7 NC_005261.1 + 106811 0.67 0.682172
Target:  5'- gCGCcGAgugGCCCGccaGCaGCGCGuGGUGCg -3'
miRNA:   3'- -GCGaCUa--CGGGCa--CGgCGCGU-CCAUG- -5'
23592 5' -59.7 NC_005261.1 + 105845 0.67 0.680168
Target:  5'- cCGCUGuccgcguccGCCCGgucggcgaugcgGuuGgGCAGGUGCa -3'
miRNA:   3'- -GCGACua-------CGGGCa-----------CggCgCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 101785 0.7 0.456125
Target:  5'- gCGCgUGccGCCCGgcgggGCUGCGCAcGUACg -3'
miRNA:   3'- -GCG-ACuaCGGGCa----CGGCGCGUcCAUG- -5'
23592 5' -59.7 NC_005261.1 + 100598 0.75 0.245754
Target:  5'- aGCgcc-GCCaCGcgGCCGCGCAGGUGCa -3'
miRNA:   3'- gCGacuaCGG-GCa-CGGCGCGUCCAUG- -5'
23592 5' -59.7 NC_005261.1 + 97230 0.66 0.711016
Target:  5'- gCGCUGGcgccgGCCCG-GCCGgcuggguCGCGGGg-- -3'
miRNA:   3'- -GCGACUa----CGGGCaCGGC-------GCGUCCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.