miRNA display CGI


Results 1 - 20 of 498 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23597 5' -61.2 NC_005261.1 + 133943 0.66 0.700365
Target:  5'- aCCUGCGCcagGCGCGgcgcauguuCGGCCUUUGccGCa -3'
miRNA:   3'- -GGGCGCG---UGUGC---------GCCGGGAGCuuCGa -5'
23597 5' -61.2 NC_005261.1 + 15743 0.66 0.700365
Target:  5'- gUCCGCGCGCAgGCcGaccgCCUCGccGCg -3'
miRNA:   3'- -GGGCGCGUGUgCGcCg---GGAGCuuCGa -5'
23597 5' -61.2 NC_005261.1 + 57259 0.66 0.700365
Target:  5'- gCCGcCGCACacgcuccgcaucGCGCGGCagcugCUCGcGAGCa -3'
miRNA:   3'- gGGC-GCGUG------------UGCGCCGg----GAGC-UUCGa -5'
23597 5' -61.2 NC_005261.1 + 75492 0.66 0.700365
Target:  5'- gCCGCuacgaGCGCGgGGCgCUgGAGGCg -3'
miRNA:   3'- gGGCGcg---UGUGCgCCGgGAgCUUCGa -5'
23597 5' -61.2 NC_005261.1 + 83339 0.66 0.700365
Target:  5'- gCCCGcCGcCAC-CGUGGCCCgcaGGaaGGCg -3'
miRNA:   3'- -GGGC-GC-GUGuGCGCCGGGag-CU--UCGa -5'
23597 5' -61.2 NC_005261.1 + 121446 0.66 0.700365
Target:  5'- --gGCGgGCAUGgGGCCgUCGAuGGCg -3'
miRNA:   3'- gggCGCgUGUGCgCCGGgAGCU-UCGa -5'
23597 5' -61.2 NC_005261.1 + 121509 0.66 0.700365
Target:  5'- --gGCGgGCAUGgGGCCgUCGAuGGCg -3'
miRNA:   3'- gggCGCgUGUGCgCCGGgAGCU-UCGa -5'
23597 5' -61.2 NC_005261.1 + 46197 0.66 0.700365
Target:  5'- uCCaaaaGCGCACGuCGcCGcGCCgCUCGAAGg- -3'
miRNA:   3'- -GGg---CGCGUGU-GC-GC-CGG-GAGCUUCga -5'
23597 5' -61.2 NC_005261.1 + 94043 0.66 0.700365
Target:  5'- gCCCgGCGCGCccccccaGCGGCgCCg-GGAGCa -3'
miRNA:   3'- -GGG-CGCGUGug-----CGCCG-GGagCUUCGa -5'
23597 5' -61.2 NC_005261.1 + 101847 0.66 0.700365
Target:  5'- gCCGCGCGCcCGcCGGCCgCcUGcAGCa -3'
miRNA:   3'- gGGCGCGUGuGC-GCCGG-GaGCuUCGa -5'
23597 5' -61.2 NC_005261.1 + 10550 0.66 0.700365
Target:  5'- cCCCgGCGCGCcUGCcgGGCCCacucuUUGggGCc -3'
miRNA:   3'- -GGG-CGCGUGuGCG--CCGGG-----AGCuuCGa -5'
23597 5' -61.2 NC_005261.1 + 99710 0.66 0.699394
Target:  5'- cUCCGCcacggucGCGCGCGUGGCCg-CGucAGGCg -3'
miRNA:   3'- -GGGCG-------CGUGUGCGCCGGgaGC--UUCGa -5'
23597 5' -61.2 NC_005261.1 + 104161 0.66 0.697449
Target:  5'- aCCGCGCcguccgcgggcgccGCGCGCGGgUCgUCG-GGCg -3'
miRNA:   3'- gGGCGCG--------------UGUGCGCC-GGgAGCuUCGa -5'
23597 5' -61.2 NC_005261.1 + 14784 0.66 0.690628
Target:  5'- cCCCGCGCAgGUGCcGCUCcCGcAGGCUg -3'
miRNA:   3'- -GGGCGCGUgUGCGcCGGGaGC-UUCGA- -5'
23597 5' -61.2 NC_005261.1 + 119128 0.66 0.690628
Target:  5'- gCCGCGgcCGCgGCGCGGCCauCUCGGAuccGCc -3'
miRNA:   3'- gGGCGC--GUG-UGCGCCGG--GAGCUU---CGa -5'
23597 5' -61.2 NC_005261.1 + 115412 0.66 0.690628
Target:  5'- aCCGCGgGCGgcagccggggcCGCGGCCC---GAGCUc -3'
miRNA:   3'- gGGCGCgUGU-----------GCGCCGGGagcUUCGA- -5'
23597 5' -61.2 NC_005261.1 + 1892 0.66 0.690628
Target:  5'- -gCGCGCGCcaGCGCGcGCCgCUC-AGGCc -3'
miRNA:   3'- ggGCGCGUG--UGCGC-CGG-GAGcUUCGa -5'
23597 5' -61.2 NC_005261.1 + 132217 0.66 0.690628
Target:  5'- gCCCGCGC-CACGCGaGCaguaCUaCGugaaccgcaacGAGCUg -3'
miRNA:   3'- -GGGCGCGuGUGCGC-CGg---GA-GC-----------UUCGA- -5'
23597 5' -61.2 NC_005261.1 + 124272 0.66 0.690628
Target:  5'- gCCCGCGCGCcC-CGGCCg-CGAcaaaaaauGGCa -3'
miRNA:   3'- -GGGCGCGUGuGcGCCGGgaGCU--------UCGa -5'
23597 5' -61.2 NC_005261.1 + 113041 0.66 0.690628
Target:  5'- gCCGCGCGCgGCGUGGCgcgccaccgCUCGcuGGGCa -3'
miRNA:   3'- gGGCGCGUG-UGCGCCGg--------GAGC--UUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.