miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 130135 0.66 0.95605
Target:  5'- cGCGCGCCGuccgcCGAGCGCaccACGUCcUCc -3'
miRNA:   3'- cCGCGUGGU-----GCUCGUGcu-UGUAGcAG- -5'
23598 3' -54.2 NC_005261.1 + 41071 0.66 0.95605
Target:  5'- cGGCGCgguccGCCGCcAGCccccgccaguCGAccGCGUCGUCc -3'
miRNA:   3'- -CCGCG-----UGGUGcUCGu---------GCU--UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 52802 0.66 0.95605
Target:  5'- uGCGUGCCGCGGGUugGcaAACAggggCGcuUCg -3'
miRNA:   3'- cCGCGUGGUGCUCGugC--UUGUa---GC--AG- -5'
23598 3' -54.2 NC_005261.1 + 68590 0.66 0.95605
Target:  5'- aGGCGgGCCGCGGGaGCGGggccgACggCGUg -3'
miRNA:   3'- -CCGCgUGGUGCUCgUGCU-----UGuaGCAg -5'
23598 3' -54.2 NC_005261.1 + 82343 0.66 0.95605
Target:  5'- aGCGCugC-CGGcGCACGucGGCGUCGg- -3'
miRNA:   3'- cCGCGugGuGCU-CGUGC--UUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 92610 0.66 0.95605
Target:  5'- cGGCGCgugccgggGCCcCGGGCGCGAGag-CGg- -3'
miRNA:   3'- -CCGCG--------UGGuGCUCGUGCUUguaGCag -5'
23598 3' -54.2 NC_005261.1 + 111668 0.66 0.95605
Target:  5'- -cCGCGCCGCGguGGCGgCGuACGUCGg- -3'
miRNA:   3'- ccGCGUGGUGC--UCGU-GCuUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 47671 0.66 0.95605
Target:  5'- cGCaGCGCCgaGCGcAGCACGGccgcccgcggcGCcgCGUCg -3'
miRNA:   3'- cCG-CGUGG--UGC-UCGUGCU-----------UGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 56605 0.66 0.95605
Target:  5'- cGCGCGCCA--AGCGCGcGCG-CGUg -3'
miRNA:   3'- cCGCGUGGUgcUCGUGCuUGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 63033 0.66 0.95605
Target:  5'- cGGCGC-CCGCGGcgaggcggucGCGC-AGCAgcgccgCGUCg -3'
miRNA:   3'- -CCGCGuGGUGCU----------CGUGcUUGUa-----GCAG- -5'
23598 3' -54.2 NC_005261.1 + 127215 0.66 0.95605
Target:  5'- cGGCGCGCgGCuuaAGcCGCGcGCGUCGa- -3'
miRNA:   3'- -CCGCGUGgUGc--UC-GUGCuUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 123692 0.66 0.95605
Target:  5'- cGGCGCucagcguggGCCGCGuacucggccaucAGCA---GCGUCGUCg -3'
miRNA:   3'- -CCGCG---------UGGUGC------------UCGUgcuUGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 119891 0.66 0.95605
Target:  5'- gGGCGUguacaccuggcGCCGCGA-CGCGGGCGccaaGUCg -3'
miRNA:   3'- -CCGCG-----------UGGUGCUcGUGCUUGUag--CAG- -5'
23598 3' -54.2 NC_005261.1 + 106681 0.66 0.95605
Target:  5'- cGCGCGCC-CGAGggcCGCGccGAUcgCGUCc -3'
miRNA:   3'- cCGCGUGGuGCUC---GUGC--UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 98732 0.66 0.95605
Target:  5'- gGGgGCA-CGCGGccGCGCGGGCGUUGg- -3'
miRNA:   3'- -CCgCGUgGUGCU--CGUGCUUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 87659 0.66 0.95605
Target:  5'- cGCGCACCAgGGGCAgcacCGccAGCGgugaGUCg -3'
miRNA:   3'- cCGCGUGGUgCUCGU----GC--UUGUag--CAG- -5'
23598 3' -54.2 NC_005261.1 + 41743 0.66 0.953686
Target:  5'- aGGCGUcuGgcacgacaaacuuguCCACGAGCGCGAgguGCucuucCGUCa -3'
miRNA:   3'- -CCGCG--U---------------GGUGCUCGUGCU---UGua---GCAG- -5'
23598 3' -54.2 NC_005261.1 + 31826 0.66 0.953686
Target:  5'- cGGCGCGCgCugGcGCGCGccgugcuggccucgcGGCG-CGUCu -3'
miRNA:   3'- -CCGCGUG-GugCuCGUGC---------------UUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 132631 0.66 0.952063
Target:  5'- uGGCGCcgaggaCGCGGGCGCGGcggcccuagcgGCcgCGUg -3'
miRNA:   3'- -CCGCGug----GUGCUCGUGCU-----------UGuaGCAg -5'
23598 3' -54.2 NC_005261.1 + 108038 0.66 0.952063
Target:  5'- cGCGUAgUACGGGUgcagguuuGCGAugGUgGUCg -3'
miRNA:   3'- cCGCGUgGUGCUCG--------UGCUugUAgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.