miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 97852 0.76 0.456359
Target:  5'- gGGCGcCGCCGCGgcAGCGCGGccgGCAUCGa- -3'
miRNA:   3'- -CCGC-GUGGUGC--UCGUGCU---UGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 85402 0.76 0.456359
Target:  5'- aGGCGC-CCGCGAGCcCGAGCAcgCG-Cg -3'
miRNA:   3'- -CCGCGuGGUGCUCGuGCUUGUa-GCaG- -5'
23598 3' -54.2 NC_005261.1 + 37915 0.76 0.462921
Target:  5'- cGCGCGCCaccgcugcgcgaguACGAGCGCcgGAGCcgCGUCg -3'
miRNA:   3'- cCGCGUGG--------------UGCUCGUG--CUUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 72980 0.76 0.475235
Target:  5'- cGGgGguCCGCGAGCGCGGcCAgcgCGUCc -3'
miRNA:   3'- -CCgCguGGUGCUCGUGCUuGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 72461 0.76 0.475235
Target:  5'- cGGCgaGCGCgGCGAGCGCGAGCG-CGg- -3'
miRNA:   3'- -CCG--CGUGgUGCUCGUGCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 47289 0.76 0.475235
Target:  5'- cGCGUGCCacuguGCGAGCACGAGCAUgG-Cg -3'
miRNA:   3'- cCGCGUGG-----UGCUCGUGCUUGUAgCaG- -5'
23598 3' -54.2 NC_005261.1 + 64780 0.76 0.494492
Target:  5'- cGGCGCGCCACGAcGUGCGGcgcaGCGcCGUUc -3'
miRNA:   3'- -CCGCGUGGUGCU-CGUGCU----UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 47940 0.75 0.518056
Target:  5'- cGCGCGCCgcgcGCGAGCgcguucacgcugcgcGCGAGCA-CGUCg -3'
miRNA:   3'- cCGCGUGG----UGCUCG---------------UGCUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 121637 0.75 0.534011
Target:  5'- cGGCGgcCGCCgccgGCGAGCGCGGGCuguccgCGUCg -3'
miRNA:   3'- -CCGC--GUGG----UGCUCGUGCUUGua----GCAG- -5'
23598 3' -54.2 NC_005261.1 + 70911 0.75 0.538027
Target:  5'- uGCGCGCCACGucccGCGCGAGCuccagcgccugcgCGUCc -3'
miRNA:   3'- cCGCGUGGUGCu---CGUGCUUGua-----------GCAG- -5'
23598 3' -54.2 NC_005261.1 + 23174 0.75 0.544071
Target:  5'- aGGCGCGCCGgGGGCgacaGCGAGCG-CGcCg -3'
miRNA:   3'- -CCGCGUGGUgCUCG----UGCUUGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 29979 0.74 0.554192
Target:  5'- cGGUGCGCCGCcGGCGCGuccgGCAgcggcgCGUCu -3'
miRNA:   3'- -CCGCGUGGUGcUCGUGCu---UGUa-----GCAG- -5'
23598 3' -54.2 NC_005261.1 + 54911 0.74 0.574592
Target:  5'- aGCGCGCguaGCGAGCacucgcccGCGAGCAgCGUCa -3'
miRNA:   3'- cCGCGUGg--UGCUCG--------UGCUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 135213 0.74 0.574592
Target:  5'- cGGCGCagaggGCCACG-GC-CGAGCG-CGUCg -3'
miRNA:   3'- -CCGCG-----UGGUGCuCGuGCUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 127861 0.74 0.574592
Target:  5'- cGCgGCGCCA-GGGCACGAGCGggaGUCg -3'
miRNA:   3'- cCG-CGUGGUgCUCGUGCUUGUag-CAG- -5'
23598 3' -54.2 NC_005261.1 + 110677 0.74 0.581775
Target:  5'- cGCaGCGCCugGAGCACGAgggcuuccgcgcccACGUggcCGUCa -3'
miRNA:   3'- cCG-CGUGGugCUCGUGCU--------------UGUA---GCAG- -5'
23598 3' -54.2 NC_005261.1 + 53731 0.74 0.58383
Target:  5'- cGGCGCGCCcgcacggGCGAGCACGugccgGACGUaCGcCg -3'
miRNA:   3'- -CCGCGUGG-------UGCUCGUGC-----UUGUA-GCaG- -5'
23598 3' -54.2 NC_005261.1 + 97058 0.74 0.584859
Target:  5'- cGGgGgGCgGCGGGCACGAuCcgCGUCg -3'
miRNA:   3'- -CCgCgUGgUGCUCGUGCUuGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 67666 0.74 0.59516
Target:  5'- cGCGCGCgGCGccaGGCGCGGugAgcgCGUCa -3'
miRNA:   3'- cCGCGUGgUGC---UCGUGCUugUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 19752 0.74 0.59516
Target:  5'- cGCGCuCCcgcGCGGGCGCGGGCccCGUCg -3'
miRNA:   3'- cCGCGuGG---UGCUCGUGCUUGuaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.